| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSp0874 |
|---|
| Symbol | hrcC |
|---|
| ID | 1223181 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003296 |
|---|
| Strand | + |
|---|
| Start bp | 1100687 |
|---|
| End bp | 1102393 |
|---|
| Gene Length | 1707 bp |
|---|
| Protein Length | 568 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637240734 |
|---|
| Product | Hrp conserved HRCC transmembrane protein |
|---|
| Protein accession | NP_522435 |
|---|
| Protein GI | 17549095 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1450] Type II secretory pathway, component PulD |
|---|
| TIGRFAM ID | [TIGR02516] type III secretion outer membrane pore, YscC/HrcC family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.23962 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0136899 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGCCG CGCTGCTGCT ATGGACGGCA GGCACGGTCT GCGCCGCGCC CATCCCCTGG
CAGTCGCAGA AATTCGAATA CGTGGCCGAC CGCAAGGACA TCAAGGAAGT CCTGCGCGAC
CTGGGGGCCA GCCAGCATGT GATGACGTCG ATCTCGACGC AGGTCGAGGG CAGCGTGACG
GGCTCGTTCA ACGAGACGCC GCAGAAGTTT CTCGACCGCA TGGCCGGCAC GTTCGGCTTT
GCGTGGTACT ACGACGGCGC GGTGCTGCGC GTGACCAGCG CCAACGAAGC GCAGAGCGCC
ACCATCGCGC TGACCCGCGC CTCGACCGCG CAGGTCAAGC GGGCGCTGAC GCGCATGGGC
ATCGCCGATT CGCGCTTCCC GATCCAGTAT GACGACGACT CCGGCAGCAT CGTCGTCTCC
GGCCCGCCGC GCCTGGTCGA GCTGGTGCGG GACATCGCCC AGGTGATCGA TCGCGGCCGC
GAGGACGCCA ACCGCACCGT GGTGCGCGCC TTCCCGCTGC GCTACGCATG GGCGACCGAC
CACCGGGTCA CGGTCAACGG GCAGTCGGTC AACATCCGGG GCGTGGCGTC CATCCTGAAC
AGCATGTACG GCGGCGATGG CCCGTCGGAC AGCGGCACCG CGCCACGTGC GCAGGATCGC
CGCCTGGACA GCGTCGCCCC GGGCGAAGCC AGCGCCGGCC GCGCCGGCAC GCGGGCACTG
TCGAGCCTGG GCGGCGGGAA GTCGCCGCTG CCGCCCGGCG GCACCGGTCA ATACGTCGGC
AACAGCGGCC CGTACGCGCC GCCGCCTTCC GGCGAGAACC GCCTGCGCAG CGACGAGCTC
GATGACCGCG GCAGCACGCC CATCATCCGC GCCGATCCGC GCAGCAACTC GGTGCTGGTG
CGCGACCGGG CCGACCGCAT GGCGGCGCAC CAGTCGCTGA TCGAATCGCT GGACAGCCGT
CCGGCCGTGC TGGAGATCAG CGCCAGCATC ATCGACATCA GCGAGAACGC GCTCGAGCAG
CTGGGCGTGG ACTGGCGCCT GCACAACAGC CGCTTCGACC TGCAGACCGG CAACGGCACC
AACACCATGC TCAACAACCC GGGCTCGCTC GATTCGGTGG CCACCACCGC CGGCGCCGCG
GCCGCCATCG CCGCCACGCC GGCGGGCGGG GTGCTGAGCG CGGTGATCGG CGGCGGCTCG
CGCTACCTGA TGGCGCGCAT CAGTGCCCTG CAGCAGACCG ACCAGGCGCG CATCACCGCC
AACCCCAAGG TGGCCACGCT GGACAACACC GAGGCCGTGA TGGACAACCG GCAGAACTTC
TACGTGCCGG TCGCCGGCTA CCAGTCGGCC GATCTGTACG CCATTTCGGC CGGCGTGTCG
CTGCGCGTGC TGCCGATGGT GGTGATGGAC GGCGGCACCG TGCGCATCCG CATGAACGTC
CACATCGAAG ACGGCCAGAT CACCAGCCAG CAGGTCGGCA ACCTGCCCAT CACCAGCCAG
AGCGAGATCG ACACGCAGGC GCTGATCAAC GAAGGCGACA GCCTGCTGAT CGCCGGCTAC
TCGGTGGAGC AGCAGAGCAA GTCGGTGGAC GCGGTGCCGG GCCTGTCGAA GATCCCGCTG
GTGGGCGCGC TGTTCCGGAC CGACCAGACC ACGGGGAAGC GGTTCCAGCG GATGTTCCTG
GTGACGCCGC GGGTGATTAC GCCGTAG
|
|---|
| Protein sequence | MAAALLLWTA GTVCAAPIPW QSQKFEYVAD RKDIKEVLRD LGASQHVMTS ISTQVEGSVT
GSFNETPQKF LDRMAGTFGF AWYYDGAVLR VTSANEAQSA TIALTRASTA QVKRALTRMG
IADSRFPIQY DDDSGSIVVS GPPRLVELVR DIAQVIDRGR EDANRTVVRA FPLRYAWATD
HRVTVNGQSV NIRGVASILN SMYGGDGPSD SGTAPRAQDR RLDSVAPGEA SAGRAGTRAL
SSLGGGKSPL PPGGTGQYVG NSGPYAPPPS GENRLRSDEL DDRGSTPIIR ADPRSNSVLV
RDRADRMAAH QSLIESLDSR PAVLEISASI IDISENALEQ LGVDWRLHNS RFDLQTGNGT
NTMLNNPGSL DSVATTAGAA AAIAATPAGG VLSAVIGGGS RYLMARISAL QQTDQARITA
NPKVATLDNT EAVMDNRQNF YVPVAGYQSA DLYAISAGVS LRVLPMVVMD GGTVRIRMNV
HIEDGQITSQ QVGNLPITSQ SEIDTQALIN EGDSLLIAGY SVEQQSKSVD AVPGLSKIPL
VGALFRTDQT TGKRFQRMFL VTPRVITP
|
|---|
| |