| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSp0870 |
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| Symbol | hrcN |
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| ID | 1223177 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003296 |
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| Strand | + |
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| Start bp | 1096298 |
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| End bp | 1097617 |
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| Gene Length | 1320 bp |
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| Protein Length | 439 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 637240730 |
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| Product | type III secretion system ATPase |
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| Protein accession | NP_522431 |
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| Protein GI | 17549091 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1157] Flagellar biosynthesis/type III secretory pathway ATPase |
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| TIGRFAM ID | [TIGR01026] ATPase FliI/YscN family
[TIGR02546] type III secretion apparatus H+-transporting two-sector ATPase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.388833 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00178442 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGACCCATC TCGCGCTGCT CGACTCCCTG GAGAGCGCGG CACGGACCAC GCCGCTCATC
CGCCGCTTCG GCAAGGTGGT TGAAGTCACC GGCACGCTGC TGCGCGTGGG CGGCGTCGAT
GTCCGGCTGG GCGAGCTGTG CACCCTCACC GAAGCGGACG GCACCGTGAT GCAGGAAGGC
GAGGTGGTCG GCTTCAGCGA GCACTTCGCG CTGGTAGCGC CGTTCAGCGG CGTGACCGGC
CTGTCGCGCT CCACGCGGGT GGTGCCCAGC GGCCGCGCGC TGTCGGTCGG CATCGGCCCG
GGTCTGCTCG GGCGCGTGCT GGACGGGCTC GGCAGGCCGG CCGACGGCGG GCCGCCGCTG
GACGTGGTGG AATACGTGCC GGTGTTCGCC AACGCGCCGG ACCCGATGAC GCGGCGGCTG
GTGGAGCATC CGCTGGCCAC CGGCGTACGC GTGATCGACG GCCTGGCCAC GCTGGCCGAA
GGGCAGCGCA TGGGCATCTT CGCCCCGGCC GGCGTGGGCA AGAGTACGCT GATGGGCATG
TTCGCGCGCG GCACGGAGTG CGATGTCAAC GTGATCGTGC TGATCGGCGA GCGCGGGCGC
GAAGTGCGTG AGTTCATCGA GCAGATCCTG GGCGAGGAGG GCATGCGCCG CTCCGTGGTG
GTGTGCGCGA CCTCGGACCG CTCCGCCGTG GAGCGCGCCA AGGCCGCGTA CGTCGGCACC
GCCGTGGCTG AGTACTTCCG CGACCAGGGC CTGCGCGTGC TGCTGATGAT GGACTCGCTC
ACGCGCTTCG CCCGCGCCCA GCGCGAGATC GGCCTGGCCG CCGGCGAGCC GCCCACGCGG
CGCGGTTTCC CGCCCTCGGT GTTCGCGGAG CTGCCGCGTC TGCTGGAGCG CGCCGGCATG
AGCGCGGCCG GCTCCATCAC CGCGCTCTAC ACGGTGCTGG CCGAAGACGA ATCGGGCAAC
GACCCGGTGG CCGAGGAAGT GCGAGGCATC CTCGATGGTC ACCTGATCCT GTCGCGCGAC
ATCGCCGCGC GCAACCGCTA TCCGGCCATC GACATCCTGA ACAGCCTGAG CCGGGTGATG
ACGCAGGTGA TGCCGCGCGA TCACTGCGAC GCGGCCGGGC GCATGCGGCA GCTGCTGGCC
AAGTACAACG AGGTCGAGAC GCTGCTGCAG ATGGGCGAGT ACAAGGAAGG CAGCGACCCG
GTGGCCGATG CCGCGGTGCA GTGGAACGAT TGGATGGAAT CCTTCCTGCG CCAGCGCACC
GACGAGTGGT GCAGCCCCGA CGAGACCCGA CGGCTGCTTG ACGAGATCGC ACTGGCATGA
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| Protein sequence | MTHLALLDSL ESAARTTPLI RRFGKVVEVT GTLLRVGGVD VRLGELCTLT EADGTVMQEG
EVVGFSEHFA LVAPFSGVTG LSRSTRVVPS GRALSVGIGP GLLGRVLDGL GRPADGGPPL
DVVEYVPVFA NAPDPMTRRL VEHPLATGVR VIDGLATLAE GQRMGIFAPA GVGKSTLMGM
FARGTECDVN VIVLIGERGR EVREFIEQIL GEEGMRRSVV VCATSDRSAV ERAKAAYVGT
AVAEYFRDQG LRVLLMMDSL TRFARAQREI GLAAGEPPTR RGFPPSVFAE LPRLLERAGM
SAAGSITALY TVLAEDESGN DPVAEEVRGI LDGHLILSRD IAARNRYPAI DILNSLSRVM
TQVMPRDHCD AAGRMRQLLA KYNEVETLLQ MGEYKEGSDP VADAAVQWND WMESFLRQRT
DEWCSPDETR RLLDEIALA
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