| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSp0869 |
|---|
| Symbol | hrpF |
|---|
| ID | 1223176 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003296 |
|---|
| Strand | + |
|---|
| Start bp | 1095396 |
|---|
| End bp | 1096301 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637240729 |
|---|
| Product | type III secretion system protein HrpB |
|---|
| Protein accession | NP_522430 |
|---|
| Protein GI | 17549090 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1317] Flagellar biosynthesis/type III secretory pathway protein |
|---|
| TIGRFAM ID | [TIGR02499] type III secretion apparatus protein, HrpE/YscL family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.371286 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.00150472 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGGTTATTT GGCTGAGGCG CGAAGCCGCG CTGGGCGTGT CGTCCGACGT GATCCGGGCG
GCCGACCGAC ACCGCGTCGT CGAGCTCGAC GCGGCCGTGC AGGCGGTGTA CGAAGAGCGC
GACGCCGTGC TGGCCGCCGC CCGCGCAAAG GCCGAGGCCA TCGTGGCGCA AGCGCGCGCG
GTTGCCGACG ACCTCATCAA GGACGCCAAC GAACGCGCCG CGAACAGCGA GCAACTGGGC
TATGCCGAGG GGCAGCGCAA GGCCTTGGCC GAATTCCATG CGTCCATGGT CGCGCGCGCC
TACAGCGAGG CCGAATCCAC CCGGCGCGTG GAGGCCCGCC TGCAGACGGC CGTCATGCAG
GCGGTGGAGC GCATCGTGCT GGAGTCGGAC CGCCAGGCGC TGTTCGCGCG GGTGGCCTCG
ACCCTGGGCG GCGTGCTGCA GAGCCAGGCG CGCCTGACCC TGCGCGTCTG CCCGGCCGAG
CTCGACGCGG CGCGCGCGGC CTTTGCCCGC GCCGTCGAGG GCGGCCTGCT CAATGCCACC
GTCGAAGTGC TGGCCGATGA CAGCACCAAG CCCGGCGATT GCCGCTGCGA ATGGGATCAT
GGCGTGGCCG ATGCCAGCCT GAGTGTCCAG CTGGCGGCGC TGCGCAAGGC CATCGCCCCG
AGCGCTTCGG TGCCGGCGGA GGCAGCGCAG CCGGCCGCCG CCGAGGATGA GGAGGAGGAC
GCCGACATCG ATGCGCCGGA CGAATACGAG TACGACTACG ACGATTCCGA AGACGAAGAG
GACGAAGACG CCGTATCGCA CGAAGACGGC GAGGACGAGG AAGACGACGA TAGCGACGAC
GACGACGAGG ATGAAGACCT CTACGAAGAG GACGACGAAG ACGAAGACGA GGAGGACGAC
GAATGA
|
|---|
| Protein sequence | MVIWLRREAA LGVSSDVIRA ADRHRVVELD AAVQAVYEER DAVLAAARAK AEAIVAQARA
VADDLIKDAN ERAANSEQLG YAEGQRKALA EFHASMVARA YSEAESTRRV EARLQTAVMQ
AVERIVLESD RQALFARVAS TLGGVLQSQA RLTLRVCPAE LDAARAAFAR AVEGGLLNAT
VEVLADDSTK PGDCRCEWDH GVADASLSVQ LAALRKAIAP SASVPAEAAQ PAAAEDEEED
ADIDAPDEYE YDYDDSEDEE DEDAVSHEDG EDEEDDDSDD DDEDEDLYEE DDEDEDEEDD
E
|
|---|
| |