| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSp0860 |
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| Symbol | hrcR |
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| ID | 1223167 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003296 |
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| Strand | - |
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| Start bp | 1087324 |
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| End bp | 1087977 |
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| Gene Length | 654 bp |
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| Protein Length | 217 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637240720 |
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| Product | type III secretion system protein |
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| Protein accession | NP_522421 |
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| Protein GI | 17549081 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4790] Type III secretory pathway, component EscR |
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| TIGRFAM ID | [TIGR01102] type III secretion apparatus protein, YscR/HrcR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0263491 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0101048 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCAGAACG TTGAGTTCGC CTCCCTGATC GTGATGGCGG TGGCGATCGC GCTGCTGCCG
TTCGCCGCCA TGGTCGTCAC CTCGTACACC AAGATCGTCG TGGTGCTCGG CCTGCTGCGC
AATGCGCTCG GGGTCCAGCA GGTGCCGCCC AACATGGTCC TCAACGGCAT CGCGATGATC
GTCTCGTGCT TCGTCATGGC GCCGGTCGGC ATGGAAGCCA TGCAGCGCGC GCACGTGCAG
ATCAACGCGC AGGGCGGCAC CAACATCACC CAGGTGATGC CGCTGCTGGA CGCGGCCCGC
GACCCGTTCC GTGAATTCCT GAACAAGCAC ACCAATGCGC GCGAGAAAGC GTTCTTCATG
CGCTCCGCGC AGCAACTGTG GCCGCCGGCC AAGGCCGCGC AGCTCAAGGA TGACGACCTG
ATCGTGCTAG CGCCGGCCTT CACGCTCACC GAGCTGACCT CGGCCTTCCG CATCGGCTTC
CTGCTCTACC TCGCCTTCAT CGTGATCGAC CTGGTGATCG CCAACCTGCT GATGGCGCTC
GGGCTGTCGC AGGTGACGCC GTCGAACGTG GCCATCCCGT TCAAGCTGCT GCTGTTCGTG
GTGATGGACG GCTGGTCGGT GCTCATCCAC GGCCTGGTCA ACACCTATCG CTGA
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| Protein sequence | MQNVEFASLI VMAVAIALLP FAAMVVTSYT KIVVVLGLLR NALGVQQVPP NMVLNGIAMI
VSCFVMAPVG MEAMQRAHVQ INAQGGTNIT QVMPLLDAAR DPFREFLNKH TNAREKAFFM
RSAQQLWPPA KAAQLKDDDL IVLAPAFTLT ELTSAFRIGF LLYLAFIVID LVIANLLMAL
GLSQVTPSNV AIPFKLLLFV VMDGWSVLIH GLVNTYR
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