| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSp0859 |
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| Symbol | hrcS |
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| ID | 1223166 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003296 |
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| Strand | - |
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| Start bp | 1087056 |
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| End bp | 1087316 |
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| Gene Length | 261 bp |
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| Protein Length | 86 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637240719 |
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| Product | Hrp conserved HRCS transmembrane protein |
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| Protein accession | NP_522420 |
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| Protein GI | 17549080 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4794] Type III secretory pathway, component EscS |
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| TIGRFAM ID | [TIGR01403] type III secretion protein, HrpO family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0274249 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.00877367 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGGACTACG ACAACATCAC CCGCCTGACC TCGACCGCAC TGCTGCTGTG CCTGCTGGTT
TCGCTGCCGG CGGTGGGCGT GGCGGCCATC GCCGGCCTGC TGATCTCGTT CCTGCAGGCC
ATCACGTCGC TGCAGGACAG CAGCATCTCG CACGGCCTGA AGCTGATCAT CGTATCGCTG
GTGATCGTGG TGGCCGCGCC GTGGGGGGCC GCGGCCATCC TGCAGTTCGC CAACTCGATC
ATGCAGACAC TCTTCACTTA G
|
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| Protein sequence | MDYDNITRLT STALLLCLLV SLPAVGVAAI AGLLISFLQA ITSLQDSSIS HGLKLIIVSL
VIVVAAPWGA AAILQFANSI MQTLFT
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