| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS05538 |
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| Symbol | RSp0085 |
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| ID | 1222488 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003296 |
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| Strand | + |
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| Start bp | 92483 |
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| End bp | 94939 |
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| Gene Length | 2457 bp |
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| Protein Length | 818 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637239944 |
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| Product | putative RHS-related protein |
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| Protein accession | NP_521646 |
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| Protein GI | 17548306 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.252151 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.640714 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGATTTGCG CGAATGGCCC CGATGCGGTT GCCGAGATGA CGATTGCGGG CGTCAATAGC
AAAAATGATG GAATCATGAA CGCGATCTGC AATGGCGGGT GCACGTATGA GTTCGATAGC
GAGAACAACG GGAATTACTC CTACCGTTAC ATGGGCCCCC CCGATGGCAA GATGATCGGC
GACTTCGCCG CGCTTCTGAC GGGGGAATGC GCGTCTGGAT ATACGAGGGA ATCTGACGGC
ACCTGCCAGC CAAGGCCGCC GGTCCAGGTG TGTTCGGCCG GCAGCCCCGC CATCCCTGGC
TCTGGCGTTG CAACGGTCTC GGAACGCGAT GGTGGCGGCA GCGCAGAACT TCCGATCACG
CTTGCCTATC GCTCCTCCAG CCGCTATGGA AAGGGGGTCG GCGGCGGGCA ATGGATGCTC
GGTTGGCAGC GTAGCCTGGA CACCAGCCTG GCGGCCGAAT CAACCCCGCA AGTTGCCGTG
CAGCGCGATG ACGGGTCGGT CTCGACCTTC ACCCCGAACG GAACGGCCTG GTCAGCTTCG
AACACGCAGG ATACGTTGCA GCCGATTACC GATGCCAATG GCAAGACGAC CGGCTGGCAG
TACACGGTGG TCGATACAGG GGCGGCGGAG ACTTACGACA CCAGTGGCAA GCTTCAATCC
GTCCGCGACC GCAATGGCCG CACCACGACG CTCGCCTACA ACGCCGCCAA CCAACTGACG
ACAGTCACCG CCCCGAGCGG TCGCAGTCTT GCTGTTGCTT ACGACAGCCA GAACCGTGTG
GCCAGCGTGA CCGCGCCGTC CGGCGCTGTC ACCGGCTATG GCTATAACGG CGCCGGCATA
TTGTCGACCG TCACACACCC GGACGGTACG ACCCGCCAGT ACGTCTACGA AGACGGCCGC
TTCCCGGCTG TACTGACCGG CATCATCGAC GAGAACGGCA ACCGCTACGC TACCTACGCC
TATGACAGCC AAGCCCGCGC GATCAGCAGC ACGCTAGCGG GTGGTGTGAA TCAGTATCAG
TTCCAATACG GCGACAACTA CCAGACCACC ATCACCGACC CCACGGGCAA GACCAGCGTC
TATTCGTTCC TCAAGCAGAA CGGCGTCCTG CTGCCCACCT CCATTAGTGC CCCGTGCGGC
CTGTGCGGCA GCACGCGCAA GAGCAGCAGC TATGACGCTA ACAACAACCT GACCCAGGAA
ACCGACTACA ACGGTACCGT CACCACGCAC GCCTACGACA GCCAGAAGCG CGAGATCCAG
CGGGTAGACG GTGCGGGCAC GGCCAGCGCC CGCACCACCA CCACCGAGTG GCACAAGATC
TGGAACCTGC CGCTACGGAT TGCCTCGCCG ACCAAGCTGG AAACGTACAG CTACGACAGC
AACGGCAACC TGACCCGCTA CAGCGAAACG CCGACCGCTG ACAGCGATGG TAGCCAGGGC
ACCGGCGCTG CCGCGACTGG CGCAACCCGG ACCACCAACT GGACCTACAC CGCCGGCGGC
CAGGTGGCGA CCAGCAGCGG CCCGCGCACG GATGTGGCCA CCAGCACCAC CTACGTCTAC
CGCACCGCCG ACGATACCAA CTCGCCGCCG CTATACCGCA AAGGCGACCT GTACCAGATC
ATCGATCCGC TGGGCCGTAC CACCACGATC AACCGGTACG ACGCCAGCGG CCGTCCGCTG
CAGATGACGG ATGCCAACGG CATCGTCACC GCATTCACCT ACTCGAACCG CGGCTGGCTG
ACCCGTCAGA CCATCACCCC GGCAGGCGAG GCGGGCCAGA CCACCAACTA CAGCTATGAC
GCGGTGGGCC AGTTGACCAA GGTCACGCTG CCGGACGGCA GCAGTGTCAG CTTCGCCTAC
GATGCCGCAC ACCGCCTGAC GGGCGCCGCC GACAGCCAGG GCAACAGCAT CGCCTACGTG
CTCGACGCGA TGGGCAACCG CACCCAGGAG CAGGTCACGG ACCCCAACGG AGTCCTGACA
CGACGGGTCG ACCGCGTGTT CGACTCGATG AACCGGCTCC TACGAGTCAC GCAGCAAGGA
GCCTTGCCAT CCGGTTCGAC GTCCGATGCG CCGATCAAGG TGGTTCCGGC GGGCATCACC
GCCTCCAGCA CTTCCGGCGA CAACGTGCCG GCCCGCGCGA TTGACGGGGA TCCCAGTGCC
TGGATTGCCT CCGGCTATCC CACGCAGTGG ATCGAGGTCG ATCTTGGCGC GGCGGTGCCG
CTCAAGAAAG TGCGGATGCT GGTTTCGCAG AGTCCTGCCG GCCAGACCAC GCACGTCGTG
ACGGGCGGGA TGAATCCAGC GCCGACGAGC GTACTCCAGA CCCTCTCGGG CAACACGTCG
GACGGGCAAT GGCTGGAAGC CGCCCTGGAT GGATCGGTCA GTGTCCGCTA CATCCGGATC
ACTACGACGA GCAGCCCATC GTGGGTGTCC TGGCACGAAC TCGAGTTTTA CCGTTGA
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| Protein sequence | MICANGPDAV AEMTIAGVNS KNDGIMNAIC NGGCTYEFDS ENNGNYSYRY MGPPDGKMIG
DFAALLTGEC ASGYTRESDG TCQPRPPVQV CSAGSPAIPG SGVATVSERD GGGSAELPIT
LAYRSSSRYG KGVGGGQWML GWQRSLDTSL AAESTPQVAV QRDDGSVSTF TPNGTAWSAS
NTQDTLQPIT DANGKTTGWQ YTVVDTGAAE TYDTSGKLQS VRDRNGRTTT LAYNAANQLT
TVTAPSGRSL AVAYDSQNRV ASVTAPSGAV TGYGYNGAGI LSTVTHPDGT TRQYVYEDGR
FPAVLTGIID ENGNRYATYA YDSQARAISS TLAGGVNQYQ FQYGDNYQTT ITDPTGKTSV
YSFLKQNGVL LPTSISAPCG LCGSTRKSSS YDANNNLTQE TDYNGTVTTH AYDSQKREIQ
RVDGAGTASA RTTTTEWHKI WNLPLRIASP TKLETYSYDS NGNLTRYSET PTADSDGSQG
TGAAATGATR TTNWTYTAGG QVATSSGPRT DVATSTTYVY RTADDTNSPP LYRKGDLYQI
IDPLGRTTTI NRYDASGRPL QMTDANGIVT AFTYSNRGWL TRQTITPAGE AGQTTNYSYD
AVGQLTKVTL PDGSSVSFAY DAAHRLTGAA DSQGNSIAYV LDAMGNRTQE QVTDPNGVLT
RRVDRVFDSM NRLLRVTQQG ALPSGSTSDA PIKVVPAGIT ASSTSGDNVP ARAIDGDPSA
WIASGYPTQW IEVDLGAAVP LKKVRMLVSQ SPAGQTTHVV TGGMNPAPTS VLQTLSGNTS
DGQWLEAALD GSVSVRYIRI TTTSSPSWVS WHELEFYR
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