| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS05334 |
|---|
| Symbol | RSp1289 |
|---|
| ID | 1223601 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003296 |
|---|
| Strand | - |
|---|
| Start bp | 1640409 |
|---|
| End bp | 1640990 |
|---|
| Gene Length | 582 bp |
|---|
| Protein Length | 193 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637241152 |
|---|
| Product | putative type-4 fimbrial biogenesis transmembrane protein |
|---|
| Protein accession | NP_522848 |
|---|
| Protein GI | 17549508 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4726] Tfp pilus assembly protein PilX |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.754794 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCGTT TCAATGGTCG TCTTCGCCGT GGCCGCCGCG CGGACCAGGG CTACACCCTC
ATCGTCGGCC TGATGCTGTT GCTCGTGCTG ACGCTGTTCG GGCTCGGCAT GTTCCGCAGC
CTGGGGCTGC AGGAGCGGAT TGCCGCCAAC ACGCGCGACA AGCAGCGGGC GTTCGAGTCG
GCGCAGAGCG CCCTGCAGTA CGGGGAGTGG TGGCTGCGGC AAAGCAGCAG CAGCCTGTCG
GCGTCGACAT GCAGCGGCGT GACCAGCGCC AACGTGTCGA CCGGCATGCG GGTGTGCAAT
CTGGCGCCGA CTTCGCCGAC CAGCCTCCCA TGGAGCGTGC GGTCCGACTA CCTGCCGCCG
TCCATGACCG CCAACGGCGG CGGCGGGCTG ACGTCGTCCG GCGACGTCAA CTATGCCGCC
AAGCCGGGGC TGTACATCAA CTACCTCGGC CTCTCGGCGA ACGGCCTTGC CGCGCTTTAT
CAGGTCACGG CGTTCGGTTA CGGCGGTGAC GCGACCACTG CGTCCGTCGT GCAGAGCACG
TATCAGATTG CGTCGGGTGC GAAAGATCTG GGACAACAAT AA
|
|---|
| Protein sequence | MNRFNGRLRR GRRADQGYTL IVGLMLLLVL TLFGLGMFRS LGLQERIAAN TRDKQRAFES
AQSALQYGEW WLRQSSSSLS ASTCSGVTSA NVSTGMRVCN LAPTSPTSLP WSVRSDYLPP
SMTANGGGGL TSSGDVNYAA KPGLYINYLG LSANGLAALY QVTAFGYGGD ATTASVVQST
YQIASGAKDL GQQ
|
|---|
| |