| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS05316 |
|---|
| Symbol | RSp1271 |
|---|
| ID | 1223583 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003296 |
|---|
| Strand | - |
|---|
| Start bp | 1607523 |
|---|
| End bp | 1609862 |
|---|
| Gene Length | 2340 bp |
|---|
| Protein Length | 779 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637241134 |
|---|
| Product | putative ferrisiderophore receptor protein |
|---|
| Protein accession | NP_522830 |
|---|
| Protein GI | 17549490 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.469557 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCACCCC TCCAGCGCGC AACGGCTGCC ATGCCGCTGC GCACGCCGGT GTGCCGCGCC
GTGCTCGCGC TCGCCGCTGC CGCACCGCTG TCCGCCTTTG CCGCCGTCGA TGCCGATGCC
GTCGGGGCCG CGCCGGCTTT CGTCGCCCAG GAACTCGCGC CCACCGTGGC GCATGCCGGC
ACGGCTTCCG CGCCGTTCGC CCGCAACACC CCCGCCGTGG TCCAGACCGT GACCGCCGAC
CAACTGGCCG ACCGCAACCT CGTCACCGCC GAAGACGCGC TCAAGTACCA GCCCAACGTG
ATGGTGCGCC GGCGCTTCAT CGGCGACCGC AATGCGATCT TCGCCGGCCG CGATTTCAAC
GAGATCCAGA GCGCGCGGGG CCTGCTGTAC GCCGACGGCA TCCTGCTGTC GAACCTGCTC
GGCTCCAGCT ACGGCTACCC GCCGCGCTGG TCGATGGTCG GCCCCGACGA CCTGGCCCGC
GTCGATATCC TGTACGGGCC GTTCTCGGCG CTGCTGCCGG GCAACTCGAT GGGCACCACG
ATTGCGCTCA CCCTGCGCAA GCCCGAGGCC TTCGAAGCCG GCGCGCAGAC CCAGGTCATG
CGCCAGCACT ACAGCGATGC CTACGGCTTC TCGCGCAACG TCACCGGCAA CCACGAGAGC
GCCTCGCTGG GCGATCGCAT CGGCCGGCTC TGGTATGCGC TGTCGGTCGA CCGGCTGGAG
AACGACAGCC AGCCGATGCA GTACGCCACG CCCAATTCGG TCTTCACCGG CGGCCAGGCG
AGCGTTCCGG TGACCGGCGC GGTGCGCGAT CTCGGCCCCG GCGGCCAGCC GCGCGTGATC
CTCGGGGCGC AGATGCTCGA GCGCACGCAG CAGCTGCAGG AAACCCTGCG CCTGGGCTAC
GCCTTCAGCG AACGCCTGGA GGCCACGCTC ACGCTCGGCC ACTGGGAGAA CCACTTCGCC
GACCGCGCCG AAAGCTTCCT GCGCGATGCG ACCCCGGCGG CGGCAGGCAA CGTGGTCACC
GGCGGCAATG TGCTGATCGG CGGCATGCCG TACACCATCG CCCAGAACGC CTTCGCGCCG
CAGAACGGCG ATCAGGAGAA CTGGCTCTAC GGCCTCGGCG TCAAGGGCCG GGTGGGCGAC
TGGAAGCTCG ATGCCAACGC TTCCGCCTAC GACGTCACGC GCGACATCCT GCGCGCATCG
AACACGGCGT CGGCCGGCGG CCCCGGCACG GTGTTCTACG GCGACGGCAC GGGCTGGTCC
AACTTCGACC TCAAGGCGGT CTCGCCCACG GTGTCGGGCC ATACCGTCAC GACCGGCTAC
CACTACGACC AGTACCACCT GCGCAACCAG ACCTTCAACG CGAGCCACTG GCCCACCGAG
ACGCTGTCGA CGCTCAAGTC CAGCTACCAG GGCGATACCC GCACGCAGGC CCTGTTCGCG
CAGGATGCCT GGGCCTTCGC GCCGCGCTGG CTGGCGACGC TGGGGCTGCG CTACGAAACC
TGGCGCGCCG ACAACGGCCG GCTCGGCAAC GCCGGCACTA CGCTGGGCTA CGCCGGACGC
ACGGAAGACG CCTTCTCGCC CAAGGCGGCG CTGCAATGGC AGGCCACGCA GGACATGCTG
CTGCGCTTGT CATACGGCCG CGCGGTGCGC TTCCCGACCG TGGCCGAGCT GTTCCAGGGC
AGCATCAGCG GCAACACCAT CGTCAACAAC GACCCCAACC TCAAGCCCGA GCGCGCCAAT
GATCTCGACT TCACCGTCGA GCAGGCGGTG CCCAGCGGCA TGCTGCGCGC CAGCCTGTTC
CAGAGCGACG TGCGCGACAG CCTCTACACG CAGACCAACA TCACCGTCAC GCCCAACGTG
ACCAGCGTGC AGAACGTCGA CCGCGTGCGC ACGCGCGGCA TCGAGCTGGC GTATTCCGGG
CAGGATGTGG CGCGCGATCT GGGCGTGCGC GGCGTGGACA TCGAGGCCAA TGCCGCCTTC
ACGCAAGCCA GGACGCTGGC CGATGCCGCC AACCCGGCCT ATGTCGGCAA GGTCTGGCCG
CGCATGCCGC GCGTGCGGGC CAACCTGTTC GCCAGCTGGC ACGCGAGCGC CGGCTGGACT
CTCGGCGCGG GGCTACGCTA TTCGGGGCGG CAGTACGGCA CGCTCGACAA CACCGACGTG
CTGCCCGATG TCTATGGCGG CACCAGCCGC TTCTTCACCG TGGATCTCAA GGCCGGCTAC
CGCGTCGACA AGCATGTCAC GCTGGCGCTG GGCGTCGACA ACCTGACCGA CCGGCGGTAC
TTCGTCTATC ACCCGTATCC GTCCCGGACC TTTTATGGGC AACTGAAATG GCGTCTATGA
|
|---|
| Protein sequence | MSPLQRATAA MPLRTPVCRA VLALAAAAPL SAFAAVDADA VGAAPAFVAQ ELAPTVAHAG
TASAPFARNT PAVVQTVTAD QLADRNLVTA EDALKYQPNV MVRRRFIGDR NAIFAGRDFN
EIQSARGLLY ADGILLSNLL GSSYGYPPRW SMVGPDDLAR VDILYGPFSA LLPGNSMGTT
IALTLRKPEA FEAGAQTQVM RQHYSDAYGF SRNVTGNHES ASLGDRIGRL WYALSVDRLE
NDSQPMQYAT PNSVFTGGQA SVPVTGAVRD LGPGGQPRVI LGAQMLERTQ QLQETLRLGY
AFSERLEATL TLGHWENHFA DRAESFLRDA TPAAAGNVVT GGNVLIGGMP YTIAQNAFAP
QNGDQENWLY GLGVKGRVGD WKLDANASAY DVTRDILRAS NTASAGGPGT VFYGDGTGWS
NFDLKAVSPT VSGHTVTTGY HYDQYHLRNQ TFNASHWPTE TLSTLKSSYQ GDTRTQALFA
QDAWAFAPRW LATLGLRYET WRADNGRLGN AGTTLGYAGR TEDAFSPKAA LQWQATQDML
LRLSYGRAVR FPTVAELFQG SISGNTIVNN DPNLKPERAN DLDFTVEQAV PSGMLRASLF
QSDVRDSLYT QTNITVTPNV TSVQNVDRVR TRGIELAYSG QDVARDLGVR GVDIEANAAF
TQARTLADAA NPAYVGKVWP RMPRVRANLF ASWHASAGWT LGAGLRYSGR QYGTLDNTDV
LPDVYGGTSR FFTVDLKAGY RVDKHVTLAL GVDNLTDRRY FVYHPYPSRT FYGQLKWRL
|
|---|
| |