| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS04706 |
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| Symbol | RSp0193 |
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| ID | 1222324 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003296 |
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| Strand | + |
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| Start bp | 235216 |
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| End bp | 239337 |
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| Gene Length | 4122 bp |
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| Protein Length | 1373 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637240052 |
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| Product | putative PPR repeats containing protein |
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| Protein accession | NP_521754 |
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| Protein GI | 17548414 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR00756] pentatricopeptide repeat domain (PPR motif) |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.380322 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTGGCGTT CCAACATCGG TGATCAGCGC GTACGCCATG CACCCGACGC CCCCGACATG
CAGCAGCAGC CGGCCTCGGG GCAGACGTCG GAGCCGCGGC CGGAGGGCAG CCGTGCCGTA
CGCGCTTCCA ACGAAGCGCT CGCGCCGCTG GCCGCCAACC GCTGGTCCGT GCTGGGCAGC
GCATCGAATG CGGGGTTCAG GCGGAGCACG ATGCCGCTGC CGAAACGTCC GGAGCCGGCG
GACGGTGGTG TGGATGCGTC ATCCCAGGTT GGCGATCCGC GTTCGAATGC CGCCGCGATC
GCAACGTATG CCGACGAGGG ATGCCCGGCG GACGAGGTCC TGAAGCTCAC GACGTCCCTG
CTGCGGATCG GCGGCGACTT TGCGCGCTCC ATGGCGCTGT TCGCCGCCGT CAAGGACGCC
GGCATCTGTC CGAACGTCGT GACGTACAGC GCGGCGATCT CGGCGTGCGA GAAGGCCGGG
CGCATGGACG AAGCGCTGGT CCTGCTCAAT GAACTCAAGG CGATCGGCAG CGACGATCCG
ATGATGCGGC CGAACGTCGT GACCTACAGT GCGGCGATCT CGGCATGCGA GAAAGCCGGC
CGGGCCGACC ATGCGGTGGC GCTGCTGGGC GAACTCAAGG CGCTCGCCGC CCACGATCCG
ACCATGCGTC CGAACGTCGT GACCTACAGC GCGACGATCT CGGCGTGCGA GAAGGCCGGC
TGGGTGGACG AGGCGCTGGC GCTGCTGGAC GAGCTCAGGG CGCTGGGCCA GAGCGATCCG
GCCCTGCGCC CGAACGTCAT CACCTACAGC GCCGCGATCT CGGCTTGCAT GGGGGCGGGG
CAGGCGGATC GCGCCCGGTG GCTGGTCGCC CAGGCCATCC GGGACGAGGT CGTGCTGCCC
GATGCCGGGT ATGACGCGCG GGCGAACACG TTGGACTTCC ATGCCAATCT CGTTTTCCGC
GAACCGGCGC CATCGAGCCG CCCCGTCGGC GTGGCCGCGC CGGTCGCCCT GGCGCTGATG
AGCTACCACG GGCATCGCGG CAATCTGAAT GGCGAGACGC ACTATATTGT CGGCCAGCAT
GGCGGCGATG CGATCAAGTC TGCCGTGCTG GAGACGCTCA ACCGTGTCAG GCCCAGGGCC
TATGTCGTGT CGCCCACCAA CGCAGGCATG CTGATCGCAA CCGCGCCGGA TCCGTATGCT
GTGTGGTCGG CCGAAGACGA CCTGCCGCCG TCGCCCCGCG CCGCTTCGTC GGCCTTGCCG
GATGCGTTGG CGGACCGGCT GCGCGCCATG TGGCCCCAGG CCGGCGCGTC CGAAGCCCTG
GCCGCCGGGC AGAGCGACGC CATGTCGATC GACGATGCGG AGGCGATGTC CTCGGACGAA
GAAGACGATG GGCTGATCCG TTTCCACGCC GATCCCGCCG CGCGCGCGGC GCAACTGCGC
GACCTGAAGG CGCGCGTGCG CGAGGCCGCC ACGGCCGAAG ACGTGCTCGC TCTGGTGGAA
GCGGCAGGAC GATTGCGCGC CGAGGCAGCC GAGCGCTATC CAGGCGCGTC GGCCGAGCAA
CTGAAGGACG CGTTCTTGCC CGGGAGCGAA AACGTCGATT CCAATTTCCG GCGGCTCAAC
GACATGAGGC TGGACTGCGA CGATGCCGCG CAGGCCTGGC AGGCGGCATC GGATCACTAT
CGGTCCGCCC GCGATGCCGC GCTCAAGCTG AACCTGCCGG GCGATTTCGT CACGCCGCTG
GAGACCGCCG AGGCGGAGTG CGAAGCGCAG GCCACGCGGC TTGAGATCAC GCACGGTCTG
CTGGATGGCA TCTGGCGTTT CAAGGGCTGG CGGCAATCGT TCGATGCGGG CCATCCGAAG
TCGCTCGACG TCGTGCTGAA ACCGTTGCAG CGTGCGCTCG CATTGGGCAA TGCAGAGGCG
CTTGCCACGT TGCCGTTTTG TGACGTCCCC ATCCAGGCGG AGTTCCATGA CCAGCTGAAC
ATCATCCACG GGGATGCGGC GCAGCTCGTC TCGGCAGGGG GCGGGGTGCT CCCCCTCGCC
TTGCTCAACC GGCTGCGGCC GGAGGCGCAA GCGGCCCGAC GCGCGATGTC GGCAGCCGCG
AGCGCCGAGA TTGTCAAGGC GATCGCCTTG CTGGGGCCGG CGCTGAAAGG CGAGATGCCG
GCGGCGGCCC CCGAACCCAT GTTGATCGAC GAGCCCGGCG TTTCGGAGCG CGCTGTGAGC
GTGGCGCTGA CGGAGCTGAT CGCGCATCTG ACGCCCGGCA TCGAGTCCGC GAGGCGTGTT
GCCGCGCTTG CGCAGTCGCA TGAAACGGGT GCGCTGTCGG TGGGCGACCA GGTCAGGGCA
TTCGGTCTAT GGCATCGCAC CGTGGAGGTC TTCGGCAGGG CCCGGCAGGC GTTCGAGGCG
GTCGCGGCCT CGGGCTGGCC GAGCGAGGCG CTGTCGGCGC CGGACGTGCA GGCATTGCAT
GCGGAGATCC GCCAGGGGTA TGACGCGGCC GTCGGCAAGA TGCAAGCCAC GGCCGGCCGG
GTCTTCGCCG CCATGTGGGA GCAGGTGCGC GGCAGCCTGG GGCAGGTTCG CGACGCGCAG
ACCGTCGCCC AGCTGATGGC GCGGATGCAC GTGCCGGACG AACTGGGCAT CCACGTGGCG
GATGGTTGCC AGCACATGCG CAGCTGCGTC GAGGACGCAC CCGTTGCGCT GCGCGCGGGC
GGTATCGATG CCGCCCGGAT GGTCGCGCCG TTCACCGCGC TGCAGGCTTT CCTCCGCATC
ACGCGCCAGC CATTGGCGCA GCCGGAACAA CTGTTGCCCA CCGCCGCCCA CCTTCTGCAA
GTGGTGACGC TGGCCAAGGA GGCCGGGGCC GGCGCAGCAT CGGCATTGAA GCCGGCCCTG
CACGCGTTTT CGACGTTCTG CGCGGATCTG CGGATGCAGC TGGTGCACAC CGCGCACCGC
ATCGAGCGCC GCGAGGTGAG CACGCTGTGC ACCAGCGTGT CGCCCGATAT CTGGGCGGCG
GCCACCCGCG TCGAGCACAG GCTGAGGGCA CTCGTCGATC CGAAGGCGGT CACAGGGCAA
GGCATCACGT CCGCCGGTAC GGCCGAGGAG CCGTCCGACG CCGCGATGGC CGCGGCCGCC
GACATGGCCG CGCTGCGCCT GGAGCAGCGG CGCGAGGGCC TGCTTGCCTT GCCGCCCGGC
GTCCCGGCGA CGCTGACCCG AAAGCAGGCC AGGTCTGCGC TGCTCTTGCG CGGGATCGCG
GCGGCCGGTC GCCTGACAGC GGAGTTGATC CGCTGCCACG AGCGCGCGGC GCCCGCAATG
GGCGAGGCGA ATCTGGCGCA GCGGGCCAAG GCCCTGGGCA AGATCGCCGC GGAGGTGCAG
GCCGCGGGCG CGAAGGCCGG CGAGGCCTTT GTCGACACCG TGACGCTTGG CGACGCCCCG
GAATCCGCGA GCCCGAATAG CGAGGCCGCG CTCCTCAGCG CCGCCGTGAG CCGCTGCGAG
TTCCTGGCCG AGTACATGCG GTTCTGCGTG CAGACGCTGG CCGATCTGGC GGCGGGGCGG
CGTAACGCGC AGTCGCGCAT CCGGCAGCCC GCCGGCGACG CCAGCGCCTA CGTGCGGGAA
GCGGATGCCA TCCAGGGCAT CCACGACGAC ATTGTCGACA GGCTTTATGA GGCGTGCGAG
CGCGTCGTAG GCCTGATCGA AGCGAAGCCT GCCATCGGCG ACACGCGCGA GGCCATCGAC
GCGGAAACGA ACTTTGTCCA CGAGCTGGTC GATTCGCTGG AATGGCGCGC CATCGTCGAG
ACGGACATGA CGCAGCGCGC GTGGATGCGC GCGACCCTGG ACGTGGCCGC TGTCAGCATT
GACCACGCCA GCCGGGACGT CTTGCAGGGG ATGTCGACCA TGCTGGCGAA GATCGAAGAC
GATCTTCGAG AGAGCAAGGG TCGCCTGGTG CGGTATGCCG AAAAAACGGG CGACCAGGCC
TACCGGGCGT CGTTGAAGCT CGAGGACGTC ACCCTGGGGG TCGGCGTCGC GCGGGCCCAG
ACGAGGCTGA TCGATCGATT GAACGCGCTG GCGGGGGCGT CGCGCGCCCA GCCGTCCAAG
AGCAAAGGCA AAGGGACGAA GGGCAAGGGC AAAGCCAAGT GA
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| Protein sequence | MWRSNIGDQR VRHAPDAPDM QQQPASGQTS EPRPEGSRAV RASNEALAPL AANRWSVLGS
ASNAGFRRST MPLPKRPEPA DGGVDASSQV GDPRSNAAAI ATYADEGCPA DEVLKLTTSL
LRIGGDFARS MALFAAVKDA GICPNVVTYS AAISACEKAG RMDEALVLLN ELKAIGSDDP
MMRPNVVTYS AAISACEKAG RADHAVALLG ELKALAAHDP TMRPNVVTYS ATISACEKAG
WVDEALALLD ELRALGQSDP ALRPNVITYS AAISACMGAG QADRARWLVA QAIRDEVVLP
DAGYDARANT LDFHANLVFR EPAPSSRPVG VAAPVALALM SYHGHRGNLN GETHYIVGQH
GGDAIKSAVL ETLNRVRPRA YVVSPTNAGM LIATAPDPYA VWSAEDDLPP SPRAASSALP
DALADRLRAM WPQAGASEAL AAGQSDAMSI DDAEAMSSDE EDDGLIRFHA DPAARAAQLR
DLKARVREAA TAEDVLALVE AAGRLRAEAA ERYPGASAEQ LKDAFLPGSE NVDSNFRRLN
DMRLDCDDAA QAWQAASDHY RSARDAALKL NLPGDFVTPL ETAEAECEAQ ATRLEITHGL
LDGIWRFKGW RQSFDAGHPK SLDVVLKPLQ RALALGNAEA LATLPFCDVP IQAEFHDQLN
IIHGDAAQLV SAGGGVLPLA LLNRLRPEAQ AARRAMSAAA SAEIVKAIAL LGPALKGEMP
AAAPEPMLID EPGVSERAVS VALTELIAHL TPGIESARRV AALAQSHETG ALSVGDQVRA
FGLWHRTVEV FGRARQAFEA VAASGWPSEA LSAPDVQALH AEIRQGYDAA VGKMQATAGR
VFAAMWEQVR GSLGQVRDAQ TVAQLMARMH VPDELGIHVA DGCQHMRSCV EDAPVALRAG
GIDAARMVAP FTALQAFLRI TRQPLAQPEQ LLPTAAHLLQ VVTLAKEAGA GAASALKPAL
HAFSTFCADL RMQLVHTAHR IERREVSTLC TSVSPDIWAA ATRVEHRLRA LVDPKAVTGQ
GITSAGTAEE PSDAAMAAAA DMAALRLEQR REGLLALPPG VPATLTRKQA RSALLLRGIA
AAGRLTAELI RCHERAAPAM GEANLAQRAK ALGKIAAEVQ AAGAKAGEAF VDTVTLGDAP
ESASPNSEAA LLSAAVSRCE FLAEYMRFCV QTLADLAAGR RNAQSRIRQP AGDASAYVRE
ADAIQGIHDD IVDRLYEACE RVVGLIEAKP AIGDTREAID AETNFVHELV DSLEWRAIVE
TDMTQRAWMR ATLDVAAVSI DHASRDVLQG MSTMLAKIED DLRESKGRLV RYAEKTGDQA
YRASLKLEDV TLGVGVARAQ TRLIDRLNAL AGASRAQPSK SKGKGTKGKG KAK
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