Gene RS04701 details

Gene Information

• Locus tag: RS04701
• Symbol: RSp0189
• ID: 1222320
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Ralstonia solanacearum GMI1000
• Kingdom: Bacteria
• Replicon accession: NC_003296
• Strand: -
• Start bp: 230347
• End bp: 232368
• Gene Length: 2022 bp
• Protein Length: 673 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 637240048
• Product: hypothetical protein
• Protein accession: NP_521750
• Protein GI: 17548410
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG3170] Tfp pilus assembly protein FimV
• TIGRFAM ID: [TIGR03505] FimV N-terminal domain

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 10
• Fosmid unclonability p-value: 0.0974302
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGAGCCAAT TTCGCCAGAG AGAGTCGTTC CATCGCAGTC CTCGCTGGCC GGCCGTCGCG 
ATCGCCGTGG CAATCCTGCT GCTGGTCCAG CCCACCGCGC ACGCGGCCGG CTTCGGCGCT 
TTGCGCGTGC GTTCCAATCT GGGACAGCCG CTGCAGGCCG AGATCGAGCT GATCAACGTC 
ACCGAGGAAG AAGGCCAGCA TCTAGCTGCC AGGCTGGCCT CGCCTGATGC GTATCAGCGC 
GCCGGCCTGA CCTACAACCC GATCGTCTCG ACGCTGCGGA CCTCGCTGGT GCACCAGCCC 
GACGGCAACT ACGTGGTGCG GGTGCGTTCC GCCCAGCCCA TCGGCGAGCC GATCGTCGAC 
ATCCTGGTCG ACCTGGGCTG GGGCGCCGGC CGACTCTCCC GCGCCTATAC CTTCCTGCTG 
GACCCGGCGA GCTCCGGCAG TGCGATCCAG AATGCCACGC CGATACAGGT GCCGCAGGCG 
ATGACGCCGA AGGTGTCCGA ACCCGCGCCG GCGCCGGCCG CCACACCGCG AGTCCGGATC 
GCGGCGCTGG CGCCGCAGCA TGCCGCCCGT CCGGCGCGCC AGGCCGCCCG CCCGCGGCCC 
GCCCCGGCCA CAACGGATGC CGCGCCCGGC AGGACATACA CCGTACGGCC CGGCGACAGC 
CTCTACGACA TCGCGTCGAA CGCCGCGCCA GGCCAGGACG CCGCGTCGCG GAACCAGATG 
GTGCTTGCGC TGTACCGCAG CAATCCCGAC GCGTTCATCG GCGGCAACAT CAATCGCCTG 
CGCGTCGGCT CCGTGCTGAA CATGCCGCCG GCTGGCAACA CGCTGGTCCT GACGATGAGC 
GACGGCATCG GGCAAACCGC CGGTTCTGCC GGCTCCGACG CCGACCGCAG CCGGCCGGCC 
CCGGCCGCTG CGGCACCGGT GGCCGACGAC CGCGCGCTCA AGGCAATGGA ATCGCGCGTG 
GCCGAGCTCG AGAAGAGCCT TGCCGAGATG CAGCACCAGC TCGCGCTGAA GAATGCGGAG 
CTCGCCAGGG CCGCCGCGAG CGCGCCGCTC ATGCCGGCCG CCAGTGCGCC GGCGCCGCAG 
GCCGAGACGC AGTCGTCGGC CCCGGCAGCG CAGGCGCAAG CGCTGGCCGC TCCGGCTGCG 
CCGATCGAGA CGGCGGCCAG CGCGTCGCCA CCGGTGACCG AAGCTTCCAC GCCCGCCGCC 
GCGCCCGAAC AGGCACCGGT AGCCGCCGTC GCGCAGCCAC GGGCCCCGAA GGCATCGTGG 
CTCTCGTCGT TGCCGGTCGT CTCGCTGGCG CTGGGCCTGG TGGCGCTGCT CGGCGGCTGG 
GTGGTGTATC GCCGGCTCCA GCAGACGCCG GTACGCACGC ACGGCTTCCA GAACAGCCTG 
CTGTCGCGGG AAAACACCGT GATCGCCGAT GCCAACTCGC TGTTCGGCCC GGCCGGCGCC 
CAAAACATCA ACACGTCGCA GCACAGCGTG TTCGGGACCG ATTTCCGCGT CGGCAGCGGC 
AACGAGAACA ACGACGTCGA TCCGATCGCG GAAGCCGATG TCTACATCGC CTACGGCCGC 
GACGTGCAGG CCGAGGAAAT CCTGCGCGAG ACGCTCGAAC AGCATCCGGA GCGCCAGGCC 
ATCCGCCTCA AGCTGATGGA GATCTTCGCC AACCGCCAGG ATGCGCAGGG CTTCCAGGGC 
ATCGCTGAAG ACATGCTGGC GCGGGTCGGC GCCGCCTCTG CCGAATGGGC CGAGGCCGCC 
GCGCTGGGCC GCACGTTCGA CCCGGACAAT CCGCTGTACC TGACGGTGCA GGGCGATGGC 
CCGAATGCGG ACGCGGCAGC CATGCCCGTC GCGCCCGCCC CTCCCGCGGA AGCAGCGGAC 
GCCGCTGCCG CCGAACCGGC CGAGGTCCCC GAAGCGCCCG AGGCGCCGGC CACGGCGGAC 
GACCTGCCCC GCCACAGTCT GGAGCTGCTG GCCGCGCCGG ATCAGGACCC TGCGACATCG 
GCCAAGGTGC CACGGTTGCC TGACCTGGAA CTGTTGCCCT AA 

 

Protein sequence

MSQFRQRESF HRSPRWPAVA IAVAILLLVQ PTAHAAGFGA LRVRSNLGQP LQAEIELINV 
TEEEGQHLAA RLASPDAYQR AGLTYNPIVS TLRTSLVHQP DGNYVVRVRS AQPIGEPIVD 
ILVDLGWGAG RLSRAYTFLL DPASSGSAIQ NATPIQVPQA MTPKVSEPAP APAATPRVRI 
AALAPQHAAR PARQAARPRP APATTDAAPG RTYTVRPGDS LYDIASNAAP GQDAASRNQM 
VLALYRSNPD AFIGGNINRL RVGSVLNMPP AGNTLVLTMS DGIGQTAGSA GSDADRSRPA 
PAAAAPVADD RALKAMESRV AELEKSLAEM QHQLALKNAE LARAAASAPL MPAASAPAPQ 
AETQSSAPAA QAQALAAPAA PIETAASASP PVTEASTPAA APEQAPVAAV AQPRAPKASW 
LSSLPVVSLA LGLVALLGGW VVYRRLQQTP VRTHGFQNSL LSRENTVIAD ANSLFGPAGA 
QNINTSQHSV FGTDFRVGSG NENNDVDPIA EADVYIAYGR DVQAEEILRE TLEQHPERQA 
IRLKLMEIFA NRQDAQGFQG IAEDMLARVG AASAEWAEAA ALGRTFDPDN PLYLTVQGDG 
PNADAAAMPV APAPPAEAAD AAAAEPAEVP EAPEAPATAD DLPRHSLELL AAPDQDPATS 
AKVPRLPDLE LLP