| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS03927 |
|---|
| Symbol | RSp0552 |
|---|
| ID | 1222859 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003296 |
|---|
| Strand | - |
|---|
| Start bp | 694946 |
|---|
| End bp | 696079 |
|---|
| Gene Length | 1134 bp |
|---|
| Protein Length | 377 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637240412 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_522113 |
|---|
| Protein GI | 17548773 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2215] ABC-type uncharacterized transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.176978 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGAGT TCTCGACCCT TCTGCAGCAA GGCAACGCCT GGCTGTTCAT TCCCAGCGCC
ATCCTGCTCG GCGCGCTGCA CGGCCTGGAG CCGGGCCACT CGAAGACCAT GATGGCGGCG
TTCATTGTCG CCATTCGCGG CACGCTGACG CAGGCCGTCC TGCTCGGCCT GTCGGCCACG
ATCTCGCACA CGGCGGTCGT TTGGGCCGTG GCGATGGCGG GCCTGTATTT CGGCCGGAAC
TGGAACGCGG AAGCGACGGA GCCCTATTTC CAGGTCGCGT CCGCGGTGCT GATCATCGGT
GTGGCGGCGT GGATGATCTG GCGCACCCTG CGCGACCAGC GGATGGCCCA CGCGCACGAC
CATGACCACG ATCACGGACA CGACGAAGCC AGGGACATCG ACACCGGCCA TGGCACGGTC
CGGCTCGAAG TGTTCGAGGA TGGCGTGCCG CCGCGCTTTC GCCTCTACCA GGACCAGGCG
CGCCCGCATG GCCACGCCTG GTCGGCGAGC GACGTGCACG TCGAGACGGA AAGGCCGGAC
GGGACCCGGC AGTCATTCCA CTTCGTGCAA CGCGATGGCT TTGTCGAATC CGAGCAGACG
ATCCCCGAGC CCCATGAATT CGTCGCCCGC CTGAGCCTCG GGCGCGACCG CCATCGCCAC
AGCTACGACG TCGAGTTCGT CGAGCACGGC CACGACCACC CTCACCACGC CATCCAGGAC
TACGACGGAC TGGACCTCTC CGCCCCGGGC TACCAGGATG CCCACGAACT GGCGCATGCC
AACGACATCC GCCGCCGCTT CGCCAACCGG CACGTCACGA CCGGCCAGAT CATCGTTTTC
GGCCTCACCG GCGGCCTGAT CCCCTGCCCC GCCTCCATCA CGGTGCTGTT GCTCTGCCTG
CAGCTCAAGC AGATCACGCT GGGGGCAACG CTTGTGCTGT GCTTCAGCAT CGGACTGGCC
ATGACGATGG TGGCGTCCGG CGCGCTGGCC GCACTGAGCG TGAAGCACGT ATCCAAGCGC
TGGAGCGGAT TCGGCGACTT CGCGCGAAAG GCGCCGTACT TCTCCGGGGC GCTGATCGTG
CTGGTGGGCC TGTATGTCGG CTGGCAGGGA TTGCGGGGCC TGACTAGCGT GTGA
|
|---|
| Protein sequence | MTEFSTLLQQ GNAWLFIPSA ILLGALHGLE PGHSKTMMAA FIVAIRGTLT QAVLLGLSAT
ISHTAVVWAV AMAGLYFGRN WNAEATEPYF QVASAVLIIG VAAWMIWRTL RDQRMAHAHD
HDHDHGHDEA RDIDTGHGTV RLEVFEDGVP PRFRLYQDQA RPHGHAWSAS DVHVETERPD
GTRQSFHFVQ RDGFVESEQT IPEPHEFVAR LSLGRDRHRH SYDVEFVEHG HDHPHHAIQD
YDGLDLSAPG YQDAHELAHA NDIRRRFANR HVTTGQIIVF GLTGGLIPCP ASITVLLLCL
QLKQITLGAT LVLCFSIGLA MTMVASGALA ALSVKHVSKR WSGFGDFARK APYFSGALIV
LVGLYVGWQG LRGLTSV
|
|---|
| |