Gene RS02978 details

Gene Information

• Locus tag: RS02978
• Symbol: RSp0142
• ID: 1222545
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Ralstonia solanacearum GMI1000
• Kingdom: Bacteria
• Replicon accession: NC_003296
• Strand: -
• Start bp: 163340
• End bp: 163858
• Gene Length: 519 bp
• Protein Length: 172 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 637240001
• Product: putative general secretion pathway GSPG related transmembrane protein
• Protein accession: NP_521703
• Protein GI: 17548363
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG2165] Type II secretory pathway, pseudopilin PulG
• TIGRFAM ID: [TIGR02532] prepilin-type N-terminal cleavage/methylation domain

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 0.671308
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 19
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGACCATTC GCCTGCGCGC CACCTCCGCG CGATACACGA TGCGCCCACG GCGGCACCAG 
GGTTTCACGC TGATCGAGCT GTTGGTCACG CTGGCGATTC TCGGCGTGCT GGCACTGATT 
GCCGTGCCGG TGGCGCAGGT ATCGATGCAA CGCACCAGGG AGCAGGAACT GCGGCTCGCA 
CTGCGCGAAA TCCGGAGCGC CATCGACGCC TACAAACGTG CCGGCGATGA AGGCCGCATC 
CCACGGGAAG CCGGCGCGAC CGGCTATCCC AAGCAGCTGG GCGTACTGGT CTCCGGCGTT 
GTCGACCAGC GCAACGCCAC GCCTCGCAAA CTCTACTTTC TGAGGCGCAT CCCTCGCGAC 
CCGTTCAATC CGGACCCGGA TCTTCCTGCG GAAGCCACGT GGGGCAAGCG CAGCTACGCC 
AGCGAACCGG ACCGGCCGGA GGAAGGCGCC GACGTCTATG ACGTCTATTC ACGCTCAACG 
CTGGTCGGCT TGAATGGCGT GTCGTACCGG GAGTGGTGA 

 

Protein sequence

MTIRLRATSA RYTMRPRRHQ GFTLIELLVT LAILGVLALI AVPVAQVSMQ RTREQELRLA 
LREIRSAIDA YKRAGDEGRI PREAGATGYP KQLGVLVSGV VDQRNATPRK LYFLRRIPRD 
PFNPDPDLPA EATWGKRSYA SEPDRPEEGA DVYDVYSRST LVGLNGVSYR EW