| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS02608 |
|---|
| Symbol | RSp1102 |
|---|
| ID | 1223414 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003296 |
|---|
| Strand | - |
|---|
| Start bp | 1397169 |
|---|
| End bp | 1398140 |
|---|
| Gene Length | 972 bp |
|---|
| Protein Length | 323 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 637240967 |
|---|
| Product | integrase/recombinase protein |
|---|
| Protein accession | NP_522663 |
|---|
| Protein GI | 17549323 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.524066 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.0976015 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGTCG ATCCGGCCGC GCCTTCCCCC GATCTCTTCC AGCCGAATCT GCAGGACTGG
ACCGACCAGC CCGCCCAGGC CTTCGAGCAC TGGCTGGCCG CGCGCGGCTA CCGTGCCTCG
TCGGCCACGG TGTACCGCGC GATGTGGCGC AAGTGGCTGC GCTGGACCGA GGCCCACCGC
CGCGCGCTGG CCGATTGGAG CGCCGCCGAC ATCGCCGCCT TCCTCGATGA GGCGGGCCTG
ACCAAGCTGC ACCGCTACCG CTACGCGCGC CTGATCGAGC GCGTCTTCCA CCAGCTCGCG
CTGCTGCGCG AGGGCACGCA CAACCCGGCC AGCATCGCCG TGCGGCAGAA GCTGGCCGAG
GGCGAGAACG ACCCCACCGC ATTCCTCTCG CGGGCCGAGC GCATCGCCAT CGATGCATCG
CTGGCCGCGA CGGCAGCGGC GGGCGAGGCA GCCAATGCCA GTGCCTTCAA GCTCGCCCGC
GACCGTGCCA TCGTGGCCGT GTGCCATGGC GCGGGGCTCA AGGTGGCGCA GGTCCAGTCG
CTGCGCTTGC GCCAGGTGCC GGCGGACCAG GCCACCATCA GCGTCGAGCC GGCACGCGGC
AAGCCGTACG ATGCCCCGCT GCTGGAAACG GCGCGCCCCG CGCTGTCGGC GTGGCTGGCA
GTGCGCGCCC AGGCCGAGGT GCCCGGCGAA CGCATCTTCG TCGCCGATGC CGGCGGGCGC
GCGATGCATG CCGCGTCCAT CTACCGGCGC GTCGAGTCCT GGCTGGGCGA GCTGCCGGCC
CTGGTCCACC GCAATGAGCG CCTGTCGCCG CAGACCCTGC GCAACGGCTA TGCCGCCGCG
CTGTTCGATG CCGGCGCCGG TCCCGCCGAA GTCGGCCACG CGCTGGGCCT GCGCGATCCG
GCTTCCGCCT GGCGCCTGCG CGCGGCCTAC ACTGACTGGC TTGCCGCAGA CCACCCGGGC
ACCGCTGCGT AG
|
|---|
| Protein sequence | MSVDPAAPSP DLFQPNLQDW TDQPAQAFEH WLAARGYRAS SATVYRAMWR KWLRWTEAHR
RALADWSAAD IAAFLDEAGL TKLHRYRYAR LIERVFHQLA LLREGTHNPA SIAVRQKLAE
GENDPTAFLS RAERIAIDAS LAATAAAGEA ANASAFKLAR DRAIVAVCHG AGLKVAQVQS
LRLRQVPADQ ATISVEPARG KPYDAPLLET ARPALSAWLA VRAQAEVPGE RIFVADAGGR
AMHAASIYRR VESWLGELPA LVHRNERLSP QTLRNGYAAA LFDAGAGPAE VGHALGLRDP
ASAWRLRAAY TDWLAADHPG TAA
|
|---|
| |