| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS01786 |
|---|
| Symbol | RSp0663 |
|---|
| ID | 1222970 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003296 |
|---|
| Strand | + |
|---|
| Start bp | 841981 |
|---|
| End bp | 843594 |
|---|
| Gene Length | 1614 bp |
|---|
| Protein Length | 537 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637240523 |
|---|
| Product | transport transmembrane protein |
|---|
| Protein accession | NP_522224 |
|---|
| Protein GI | 17548884 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCTCC AATCGATCGC CATGGCCCTC CACACCGCGC TCCCGCATTC CCACACCCAA
GTCCTGCCGT TCAAGGAGTC GCTGCTGGCG ATGCTCGGCA TCTGCTTCGT CGTCGTGCTG
GTGGCGCTGG ACCAGACCGT GGTCGGCACC GCGCTGCCCA CGGTGGTGGC GGAGCTCAAG
GGGTTCGACC TGTACGCGTG GGTGGCGACG TCCTACCTGC TGACCTCGGT GGTGACGGTG
CCGGTCTTCG GCCGGCTGGG AGATTTCTAC GGCCGCAAGC CGTTCGTGGT CGCCTCCATC
GTCGTCTTCA CGCTGGCTTC GGTGATGTGC GGCATGGCGG GTAGCATGGC TTTCCTGGTG
TGGGCGCGGG CGCTGCAGGG CATCGGCGGC GGCATGCTGG TCGGCACGGC CTATGCCTGC
ATTGCCGACC TGTTTCCCGA TGCCCGGGTG CGCCTGCGCT GGCAGGTCTT GCTGAGCGCC
TCGTTCGGGA TCGCCAACGC CATCGGCCCG ACGCTGGGCG GCTGGATGAC GCAGGCGCTG
GGCTGGCGCT CGGTGTTCTA TGTGAACGTG CCGTTCGGCG TGCTGGGGCT GTGGTTTGCG
TGGCGCTTCC TGCCGCATCT GCGCCAGAGC CTGCATGCCG GCCGCATCCG GCCGGACTGG
CAGGGGGCGC TGCTGATCAC GGCGGCGCTG GGCGCGCTGC AGCTCAGCGT CGAATGGCTG
CCGCGCCATG GCCTGTCGCT GCCGGTGCTG GGGTGGCTGG TGCTGTCGGC GGCGGCGTTT
GCCGGCCTGT GGTGGTGGGA GCAGCGCGCC GAGCAGCCGC TGCTGCCGTT CGAGATGGTG
CGCGACCCCG CGCTGGCGAC GCTGTTCGTG CTGGCGGCGC TGTCCGGGTT CTCGATGTTC
GCGCTGCTGT TCTATGCGCC GCTGCTGTTC CAGGGCGGGT TCGGCATGTC GCCGCAGCAG
GCAGGGCTGG TCATCACGCC GCTGGTGGTG TGCATCACGC TGGGCAGCAT CATCAACGGG
CGCCTCGTCA CCCGCATCCC GCGGCCCACC GTGATGCTCT ATGCCGGATT CGCGCTGCTG
GCGTTGGCGC TGGCGGGCAT GGCGGCATCG TCGCGCGCCA CGCCGCAACT GGCGCTGACG
CTGCTGATGC TGCTGGCGGG CCTGGGGCTC GGCTTCGTGC TGCCCAACCT GACGGTGTTC
GCCCAGCAGT CGGCGGGGCG GGCGCACTTG GGCATCGCCA CCGCCCTGCT GCAATCGTTG
CGGATGGTCG GCGGCATGAT CGGCACGGCG CTGGTCGGCA CGCTGGTCAG CGAGCGCTAC
GCGGCCGGCG TGGGCGACGC GCTGCGGGCG GACGGCGCCA CGCAATGGCT GCGCCGGCTT
GCCGATCCCG AGATTCTCAT CGATCATGAA GCGCAGACCG CGCTGCTCGC GCAGATGCAG
TCCGCCGGCC ACGACGGCGC CGCGCTGCTC GGGGCGGCGC GCCATGTGCT GGTGAGTGCC
ATCCACCTGG GGCTGATCGT GGCGGCGGTG GTGGCGGTGG TCGGCCTGTG GCGCGTGCGG
CGGGTGCCGC CGGTCGCGCT GTATCACGTG GAGCCGGTGC AGACCGCGGA ATAA
|
|---|
| Protein sequence | MSLQSIAMAL HTALPHSHTQ VLPFKESLLA MLGICFVVVL VALDQTVVGT ALPTVVAELK
GFDLYAWVAT SYLLTSVVTV PVFGRLGDFY GRKPFVVASI VVFTLASVMC GMAGSMAFLV
WARALQGIGG GMLVGTAYAC IADLFPDARV RLRWQVLLSA SFGIANAIGP TLGGWMTQAL
GWRSVFYVNV PFGVLGLWFA WRFLPHLRQS LHAGRIRPDW QGALLITAAL GALQLSVEWL
PRHGLSLPVL GWLVLSAAAF AGLWWWEQRA EQPLLPFEMV RDPALATLFV LAALSGFSMF
ALLFYAPLLF QGGFGMSPQQ AGLVITPLVV CITLGSIING RLVTRIPRPT VMLYAGFALL
ALALAGMAAS SRATPQLALT LLMLLAGLGL GFVLPNLTVF AQQSAGRAHL GIATALLQSL
RMVGGMIGTA LVGTLVSERY AAGVGDALRA DGATQWLRRL ADPEILIDHE AQTALLAQMQ
SAGHDGAALL GAARHVLVSA IHLGLIVAAV VAVVGLWRVR RVPPVALYHV EPVQTAE
|
|---|
| |