| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS01767 |
|---|
| Symbol | RSp0682 |
|---|
| ID | 1222989 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003296 |
|---|
| Strand | - |
|---|
| Start bp | 868303 |
|---|
| End bp | 870483 |
|---|
| Gene Length | 2181 bp |
|---|
| Protein Length | 726 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637240542 |
|---|
| Product | trimethylamine dehydrogenase oxidoreductase protein |
|---|
| Protein accession | NP_522243 |
|---|
| Protein GI | 17548903 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1902] NADH:flavin oxidoreductases, Old Yellow Enzyme family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.236863 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCATCCG GGCCGGCGCG GTTCGATCCG CTGTTTGAGC CGGTGCAGCT GGGCCCGGTG
GTCGCGAAGA ACCGCTTCTA TCAGGTGCCG CATTGCAACG GCATGAACCG TGTCCACCCC
AGCTCCATGG CGCGCATGCG CGGGATCAAG GCCGAAGGCG GATGGGGCGC CATCTGCACC
GAGCAATGCG ACATCCACTA CTCCGGCTGC CACCCGCGCG AACTCAGGCT CTGGGATGCG
CAGGACATCC CGATCCTGGC CAAAGCCTGC GAGGAAATCC ATCGCCATGG CGCACTGGCC
GGGATCGAAC TGGCGCATAA CGGCTTTCAT GTAAGCAATC TGGAAACCCG CGCCATTCCG
ATCGCCCCCT CCCTGGCACC GACACGCGGC ATCGCGCCCG TCACCGCCCG CGAGATGGAC
AAGCGGGACA TTCAGGACGT GCGCCGCTGG CATCGCACCG CGGCGCTGAA TGCCAAGCGG
GCCGGCTTCG ATATCGTGTA TGTCTATGCC AGCCACGATA TGACGCTGCC CGCCCACTTT
CTATCGCGAC GCCACAACCG GCGCACCGAC GAATACGGGG GCAGCCTCGA AAACCGCGTG
CGGCTGCTGC GCGAACTGGT CATGGATACG AAGGAAGCCG TGGGCGACCG CTGTGCCGTC
GCCTTGCGCT TCGGCGTGGA TGAGCTGATG GGTTCGGGCG GCCTGTCCTC GGAGGGCGAA
GGTCGTGACG TGGTCGAAAT GCTCGCGGAC TTGCCGGATC TATGGGACGT CAACCTCAGT
CCGTTCGGCA ATGACGGACA GACCTCGCGC TTCAGCGACG AGGGGTTTCA GGATCGCTAC
ATTCGCTTTG TCAAGCGCGT GACCGGCAAA CCGGTTGTCG GCGTGGGGCG CTTCACATCG
CCCGACCACA TGCTCGCCCT GGTCACGTCC GGCGCGTTGG ACCTCATCGG CGCCGCCAGG
CCTTCGATCG CCGACCCGTT CCTGCCGGAG AAGATCAGGA ACGGCGCGTT CGACGATATC
CGCGAGTGCA TCGGCTGCAA TCTCTGCGTG GCGTCGGACA AGCTGAGCGT TCCGCTGCGC
TGCACGCAGA ATCCGACCAT GGGCGAAGAA TGGCGCCGTG ACTGGCACCC GGAGGTCATT
CCGCCCAGGG ATACGGACGA TCGGGTGCTG GTGATCGGTG CCGGGCCCGC CGGGCTCGAG
GCGGCCGTCT GGCTTGGGCG GCGCGGATAC GAGACGATTC TGGCCGACCG CGCGCGCCAC
TTCGGCGGTC GCGCAGTGGC CGAATCCCAT TTGCCTGGAC TGCACGCCTG GCGCCGGGTG
GCAGATTGGC GCCTGGGCCA GTTGCGCAAG GACCGGCATG TCCTGATGCT CCCCGAGAAC
GACGTGACCG CCGAGATCGC GCTGGAATCC GACTGCAGCC TGATCGTGGT CGCGACCGGT
GCCGAATGGC GCAGGGATGG CGTGGGTCGC ACGCATGCCT TACCCATTCC GGGCCTGGAC
GCGCTCCCGG TGTACTCCCC GGACGACATC ATGGCCGGCA GGATTCCCGC CGGCCGCGTC
CTGGTCTTCG ACGACGATCA CTATTACATG GGTGGGGTCA TCAGCGAAAA GCTCGCCGCG
CACGGCTGCG CCGTGGAATT CGTGACGCCG GAAAGCCTGG TCTCCGCGTT CACGGTCAAT
ACCGCTGAGC AGCCCCGCAT CCAGAAGCGC CTGATCGAGT GCGCCAGCAA CGTGCATGTG
TCGCACAAAC TCACCCATGT CGCAGGCGAT GGCGCGGTCA TCTCATGCGT CTTTTCAGGA
CGCGAGCACT TCATCCCCGC CGATGCGATT GTGCTGGTGA CATCCCAGGT GCCGCACGAC
CGCCTGTACC ACGACATCCT CGAGCGCATC GGAAACCGGG ACGCGCGCGA TGCGGTGCCG
CGTGTCTTGC GGATCGGAGA CTGCCACGCG CCGGGCACCA TTGCCGCCGC GGTCTTCGCC
GGTCACCTGC TGGCCAGAAC GCTCGACAAC GTCCTTTACG ACGCGCCGCC ATTCCGCCGC
GAAAGCGTTG CCATGGACTG GAACCAGGCA CTGGACACGC CGCCGCCCCG GACCCCGCAC
GCTCACGCCG GCCCCAGGCA TGCCAGCCGG GTGCCCGACA CCATCGCGCA ATGCTCATCC
GTGGTGAAGG AAGATGTTTG A
|
|---|
| Protein sequence | MASGPARFDP LFEPVQLGPV VAKNRFYQVP HCNGMNRVHP SSMARMRGIK AEGGWGAICT
EQCDIHYSGC HPRELRLWDA QDIPILAKAC EEIHRHGALA GIELAHNGFH VSNLETRAIP
IAPSLAPTRG IAPVTAREMD KRDIQDVRRW HRTAALNAKR AGFDIVYVYA SHDMTLPAHF
LSRRHNRRTD EYGGSLENRV RLLRELVMDT KEAVGDRCAV ALRFGVDELM GSGGLSSEGE
GRDVVEMLAD LPDLWDVNLS PFGNDGQTSR FSDEGFQDRY IRFVKRVTGK PVVGVGRFTS
PDHMLALVTS GALDLIGAAR PSIADPFLPE KIRNGAFDDI RECIGCNLCV ASDKLSVPLR
CTQNPTMGEE WRRDWHPEVI PPRDTDDRVL VIGAGPAGLE AAVWLGRRGY ETILADRARH
FGGRAVAESH LPGLHAWRRV ADWRLGQLRK DRHVLMLPEN DVTAEIALES DCSLIVVATG
AEWRRDGVGR THALPIPGLD ALPVYSPDDI MAGRIPAGRV LVFDDDHYYM GGVISEKLAA
HGCAVEFVTP ESLVSAFTVN TAEQPRIQKR LIECASNVHV SHKLTHVAGD GAVISCVFSG
REHFIPADAI VLVTSQVPHD RLYHDILERI GNRDARDAVP RVLRIGDCHA PGTIAAAVFA
GHLLARTLDN VLYDAPPFRR ESVAMDWNQA LDTPPPRTPH AHAGPRHASR VPDTIAQCSS
VVKEDV
|
|---|
| |