Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RS00397 |
Symbol | RSp0518 |
ID | 1222825 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003296 |
Strand | - |
Start bp | 644184 |
End bp | 646910 |
Gene Length | 2727 bp |
Protein Length | 908 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637240378 |
Product | putative VGR-related protein |
Protein accession | NP_522079 |
Protein GI | 17548739 |
COG category | [S] Function unknown |
COG ID | [COG3501] Uncharacterized protein conserved in bacteria [COG4253] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR01646] Rhs element Vgr protein [TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.873856 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACGCTG ACGTGACTTC GATCCAACTG CCGTGCGCGC TCGCCCAGAA CCGCCGCGCC ATGCGCCTGG ATTTCGGCCC TGCCGCAACC GCTGCGGCGC AAACGCTGGT GCCGCAGTAT GCGGATATTC ATCAAGGCAT CTGCGCCGGC CTGGAGGCCC AGGTGGTTTG CCTGTCGGAG CGCGCCGACC TGTCGCGTGA CGAGCTGCTC GGGCTGCCCG TATCGATCCA GGTGGCGACG GATGGCGGCG CGCTGCATGC GATCAACGGC ATCGTTTCGG ACGTCCACAG CGGCGCATTC GACGGAACCC TCGCCAGCTA CCGGTTGACG ATCATCGATG CCATGTCCTT GATGCGCAGG CGCCGGAACA TGCGCATCTT CGTGGGCAAG AGCGTGCCCG ACATTCTGGG GATATTGCTG GCCGAGTGGC AGCAGCGCAG CGCGATCCTG GGACAGGCGT TCCGCTTTCA ACTGCTGCTC GACCGCAGCG GGTATCCCGT GCGCGCGCAG ACGCTGCAAT TGGATGAGTC CGACAGCGGC TTCCTCGACC GCCTGACCCG GCGCGAAGGT ATGTTCTGCT TCGTCGTGGC GGGTACGCCC GATGGCTCCG ACGGCGACAC GCCCGCGCAG ACGCTGGTGT TCTGCGACGA CCCGATGAAG CTGCCGCAAG CGCAGGCCGG CGCCGTGCCC TTCCACTACG GCGCCGCCGT CAAGGCGCGC GACTCGGTCA CCCGCTGGGG CGAGGCGCAC AGCCTGGTTT CCGGCACGAT CCGGGGCACC AGCCCGGACT ATGAAACCGG CCGGGTGGAT CGGGTCGACG TGGACACGCT GCTCGATCTG GGCAAGGCCG GCAACGACCT GGCGCGCCTG ATGACGGATG CGGCCGTCGA CCGGGCGCAC GCGGGCGATT CGCGCGCAGA CTACGAACGC CAGGGCCGCT TGCGCATGCA GGCGCACGAG CGACGCGCGG CGTACGTGCA TGCCGCAAGC GACGTGCGCA ACCTCACGCC CGGCTCCTGG TTTGTGCTGA GCGGCCACCC GCTGGTGGAC AAGCGCGAAC CCGAGCAACG CGAGTTCGTC GTCACCCGCC TGCGCCAGCG CATCGCCAAC AACTTCCCCA AGGCACTGAA CGAACAGGCG CGGGCACTCG CCGAGGCCAG CGGCTGGCAT CTTGAGGTGC GCCCCGGCCG CGACGACGCA CAGATACGCT ACGAAAACAC CTTCACTTGC GTGCCCCGTG GCGCACCGCT GACGCCCGAC TATGACCCGC GCATCGACCT GCCGCGCACC GATCCGATGA CCGCCGTGGT CGTCGGCCCG AACGGCCAGG AGGTGCACTG CGACGAGCTG GGCCGCTACA AGCTGCAATT CGTGGGGCTG TACGCCGAAG ACCATGCGCA CGCCCAGGGC GCGGGCACCA GCGGGACCGA ACGGGACAGC GCCTGGGTGC GGGCCGGCAA CCTCTGGGCG GGGCAACGCT ACGGCATCAA CCTGCCCTTG CGCGCGGGGA TGGAAGTGCT TGTCGCTTTC GCCAACGGCG ACCCTGACAG GCCCTACATC GCAACGGTGC TGCCGGGCCA CAACAACATG CCGACCGCCT TCAACGACAC GGGCGCACTG CCGGACAACA AGCACCTCAG CGGCATCAAG ACAAAGGAAG TGGACGGCTC CGGCTTTAAC CAAGTGGCCT TCGACGACAC GCCGGGCGAG ATCAGCAGCC AGCTTGCCAG CACGCATGCG GCCAGCCAAC TGAGCCTGGG CTACCTGACC CACCCGCGCG ACCAGGGCAA GGCCGAGCCG CGCGGCGAAG GGGCGGCCAT CACCACCCAG GCCATGGCGA GCATGCACGG CAACCAGGGC ATGCTGCTGT CCACGGAACG GCGCTCGCAG GCCGGCAACC AGATGGACCG CGATGGGCTG CTGGGCTTGG CGCAGGCGTT CGCCTCAGTC GCCGCTGAAT TCGGCAAGAT GGCGGCCACC CATCACGCCG GCACCTATGA CCCGGCGCCG CTCAAGCAAT TGATTCGCCA ATTGCAGGAT TGGGAACATG GCACCAACAC CGCCCCGCAG GGCGCGGGCC AAGGCGGCAC GCCGCTGATT GCGCTGTCCT CCCCCGCCGG CATCGTGGCC GGCAGCGCGG ACAACATCGC GCTGGCCGCG CAGACCTCGG TAGACGTCAT GTCCGGAGAT AACACCCAGA TCAGCGCCGG CAAGGATGCG CTGATCTACG CGACCAATGA GGTCAGCATC TTCGCCGTGG AAGGCGGCGT GCGCGTGGTG ACGGCCAAGG GCGACGTGGT GGTCGAATCG CACACGGGAA ACATTGCACT GAACGGCGCC AAGCGCATCA CGCTCAACGC TGGCGAGGAA ATCGTCCTCA ATGCGCCCAG GGTGCGCACC GTCACCCAAG GCGCGCAGAC CACGTGGGGC GGCGGGGAGA TTGTCGAAGA GGCCAGCGGC GGCTACACCA TCAAGTCCGC GAACTTTCAG CAGATCGGCG GCGGCGGTGC GCCTGCGGCG TCGAACCTCC CCGCCAATGA CCGGCATTTC GACCGGCACC TGCGATTGAC CGACCAGCTG ACCGGCGAAC CGATCGCCAA CCGGCGCTAT CGGGCCACGC TCGCGGACGG ACAAGTGGTC GAGGGCGTGT CCGATGCGCA GGGCTATGCG AAGCACCTCA AGAGCAGCAT CACCTTCGCG CACTACTCCC TGGAAATTCT CGACTGA
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Protein sequence | MNADVTSIQL PCALAQNRRA MRLDFGPAAT AAAQTLVPQY ADIHQGICAG LEAQVVCLSE RADLSRDELL GLPVSIQVAT DGGALHAING IVSDVHSGAF DGTLASYRLT IIDAMSLMRR RRNMRIFVGK SVPDILGILL AEWQQRSAIL GQAFRFQLLL DRSGYPVRAQ TLQLDESDSG FLDRLTRREG MFCFVVAGTP DGSDGDTPAQ TLVFCDDPMK LPQAQAGAVP FHYGAAVKAR DSVTRWGEAH SLVSGTIRGT SPDYETGRVD RVDVDTLLDL GKAGNDLARL MTDAAVDRAH AGDSRADYER QGRLRMQAHE RRAAYVHAAS DVRNLTPGSW FVLSGHPLVD KREPEQREFV VTRLRQRIAN NFPKALNEQA RALAEASGWH LEVRPGRDDA QIRYENTFTC VPRGAPLTPD YDPRIDLPRT DPMTAVVVGP NGQEVHCDEL GRYKLQFVGL YAEDHAHAQG AGTSGTERDS AWVRAGNLWA GQRYGINLPL RAGMEVLVAF ANGDPDRPYI ATVLPGHNNM PTAFNDTGAL PDNKHLSGIK TKEVDGSGFN QVAFDDTPGE ISSQLASTHA ASQLSLGYLT HPRDQGKAEP RGEGAAITTQ AMASMHGNQG MLLSTERRSQ AGNQMDRDGL LGLAQAFASV AAEFGKMAAT HHAGTYDPAP LKQLIRQLQD WEHGTNTAPQ GAGQGGTPLI ALSSPAGIVA GSADNIALAA QTSVDVMSGD NTQISAGKDA LIYATNEVSI FAVEGGVRVV TAKGDVVVES HTGNIALNGA KRITLNAGEE IVLNAPRVRT VTQGAQTTWG GGEIVEEASG GYTIKSANFQ QIGGGGAPAA SNLPANDRHF DRHLRLTDQL TGEPIANRRY RATLADGQVV EGVSDAQGYA KHLKSSITFA HYSLEILD
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