| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc3430 |
|---|
| Symbol | |
|---|
| ID | 1222294 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 3701304 |
|---|
| End bp | 3704069 |
|---|
| Gene Length | 2766 bp |
|---|
| Protein Length | 921 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637239847 |
|---|
| Product | putative VGR-related protein |
|---|
| Protein accession | NP_521549 |
|---|
| Protein GI | 17548147 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTTCG CGGGAAATAC GAACATCCCC GGCAGCGGCA CTGGAGGCGC GCTGGCGGGA
GGGCTCGGCA ACGTCGGCAC AATCGCTGGC ATGGCGGGAC AGATCGGTGC GCTGGCGGGT
ATGCCGGGCG CCGGGCTCAT CGGCGGCGCC GCGAGTGCGA TGCAGCTAGC CCAGACCGGC
CTGTCACTGC TGGGCAAGAC CCCCGAATCC ATCGCCGATG TCATCAACAG TGCGACCGGT
GCGCGTGCGC TGCTGACGCA GGACTTCCGT TACATCACCA TTGAAACGCC GCTGGGCGCG
GACGTCCTGC TGGTGAGCGC ATTGGTGGCA GACGAACATG TCAACCAGTT GCCCGAGATC
CACCTCGACC TGCTGTCGCA CCGGAACGAT ATTGGCTTCG AGGAGATCGT CGGCCAGCGC
GTCAAGATCA TGCTTGACCC TCGGAGCCGC AACACCAGCC TCGCAAGCAT CGTCGCCGGC
GCCGACCCCG GTAGCGAGCG CCGTTATTTC GACGGCTACG TGGCATCGTT CGGGCGTGTC
GGCAACCCCG GCGCGGTCAC GCGCTACGAA ATGACAGTGG TGCCGTGGTT CTGGTTTCTG
ACCCGCTCAA CCGATTGCCG GATTTTCCAG AACCAGAGTG CGCAGGACAT TCTTGGGTCG
ATTTTCCAGG AGCTCGGATT TTCCGATTTC GAGTTTCATC TCTGGGGCAA TCATCCAACG
CTGGAGTACG TCGTCATGTA CGACGAGTCG TACTACAACT TCTGCGCGCG GCTGATGGAG
CAGGAGGGGC TTATCTGGAC GGTCCGCTAC GAGCAGGACA AGCATGTGCT CGTGATCGGC
GACGCCAACA CCATGTTCCG GCAGATCCCA AGTCTGGCTG CCGTGCCCTA TTACGCGGAC
AGCGCCGCGA GCGAAATGAA CGGTATCGCC CGCTGGGACG AGGCGTTCCA ATTCCGGGTG
GGCAAGATCA CCTTCCGCGA CTTCAACTAC AACCAGCCCT CGTCAAGGCT GATGCACGTC
GAGGAGCCGA CAACCCTCCA GCACGCCAAC ATCGGCGCCA CGGAGCGCTA TCAGTACCAC
TCGCTCTATG ACCGGGGCGA GGACGGCCGG CGCTATGCGC GTTACGCGAT GGAGGCCGAA
GAGGCTCAAG CGCGGCGCTT CAATGGTGCT GCTTTTGCCC AGGCCATGAC CACCAGTGCT
CGCTTCACGC TCGTCAACCA CCCGGCGTCG CGCTACAACG GCAAGGAATT CATCATTCTG
GGCGTACGAC ACGAGGCCGT GAACGACTAC ACCAGGCAGG CCGCCGAGAC GCCGTATCGC
AACACGTTCA CGTGCCTGCC GTTCGACATC CCGTTTCGCC CCGCGCGTCG CACACCCAAG
CCTTACATGC ACGGCACGCA GCCGGCCATC GTGGTTGGGC CGAAAGGCGA GGAGATCTAC
ACCGACGGCA GTCGCGTCAA GCTTCACTTT CTGTGGGATC GGCGCGGCAG GCTCGACGGC
TCGGATTCGA TGTGGGTGCG CGTGTCGCAG CCCTGGGCGG GCAAAGGTTG GGGCGGCTCC
GCGATTCCGC GGATCGGGCA GGAGGTGGTC GTCGCCTTCA ACCAAGGCGA TCCCGATAAC
CCGATTGTGG TGGGGCGCGT CTTCAACGGT GAATCGGGCA ACCCGTATCA CGGGTCAAGC
GGCCAGACCA TGGGGATTCG CAGCCAGACG CACAAAGGCA CGGGTTTCAA CGAACTGCGG
TTCTCGGATG TCAATGGCGC CGAGGAGGTG TTCGTCCACG CGCAGAAGGA CATGAACACC
GTCATCAAGG ACAACGAGAC ACGTTCGATC GAAGCCGGCA ATCGCGCGAT CACGGTTCAC
AAGGGAGACG AGGTCAAGCG TGTCGCGCAG GGCAACCTGA CGGAAACCAT CGCCAAGGCT
CGTGGCACGA CAGCCAATAC GGTCAGCGTC CAGGCGCTTG CCGGTGACGC GGGGCCCGGC
AAGCAAAGCT ATCAGGCGAC CGACGAGATC GAGCATCGCG TGGGCGAGAG CGTGGTGACG
CTAAAGCCGG ACAGCATTCG GCTGACGCAT GGGGCGTCGA CCATCCTGAT CAATGCCAGC
GGCATCTATA TTGACGGGCC GGTCATTCAT CTGAATCAAG GTACGGCTGC GGCGCCTGCC
GCTGCGGGAA CTGGCGCCAC AGCGACTGCT GCGACTGCTG CCAGTGCGGT GAAAACTGGG
CTTGGCGACG ACGTTGACGC ACTCGTCGCC CAATCCCCCA GCTTGCAGAA AGATTTGCTG
CGGCTTGAGA AGGATGACTG GAAAATCAAG TATGGTGCCC CGGGAAAGGG CTCTTTTGCC
ACTCGTGGGG ACGAGCAGAC CATCACGCTC GACGGCAACC TCAAAGGCAA CGCACTTGCT
ACAACACAGA CCCTGGCACA CGAGGTCGGG CACGCAACGT ACGCGTTCAA ACCGGATTAC
TCGTCGAAGG CTGCATATGT CAATGGCACA CTGGCAGACG AGGGCGCAGC AACCATGAAT
AACGTCAAGA TTCAACGCGA AATCCTTGCC AAGGGTGGGC AGGATATCGG TATCGCTGGG
AATAGTGCCA ATCATGCTGC CTACAACAAG GCATATGATC AATTCTTGAA GGATGGCAAC
GCCGAGGCCG CTCGGCAGGC AATAGGAGCC CAATTCGGCA AAGGGGAAAT CACGTCCAAC
ACACATCAAC CTTATGCCGA TTATTACGGA AGCACATATG ACAAATCGTT CCCGCCCAAG
AAGTAG
|
|---|
| Protein sequence | MSFAGNTNIP GSGTGGALAG GLGNVGTIAG MAGQIGALAG MPGAGLIGGA ASAMQLAQTG
LSLLGKTPES IADVINSATG ARALLTQDFR YITIETPLGA DVLLVSALVA DEHVNQLPEI
HLDLLSHRND IGFEEIVGQR VKIMLDPRSR NTSLASIVAG ADPGSERRYF DGYVASFGRV
GNPGAVTRYE MTVVPWFWFL TRSTDCRIFQ NQSAQDILGS IFQELGFSDF EFHLWGNHPT
LEYVVMYDES YYNFCARLME QEGLIWTVRY EQDKHVLVIG DANTMFRQIP SLAAVPYYAD
SAASEMNGIA RWDEAFQFRV GKITFRDFNY NQPSSRLMHV EEPTTLQHAN IGATERYQYH
SLYDRGEDGR RYARYAMEAE EAQARRFNGA AFAQAMTTSA RFTLVNHPAS RYNGKEFIIL
GVRHEAVNDY TRQAAETPYR NTFTCLPFDI PFRPARRTPK PYMHGTQPAI VVGPKGEEIY
TDGSRVKLHF LWDRRGRLDG SDSMWVRVSQ PWAGKGWGGS AIPRIGQEVV VAFNQGDPDN
PIVVGRVFNG ESGNPYHGSS GQTMGIRSQT HKGTGFNELR FSDVNGAEEV FVHAQKDMNT
VIKDNETRSI EAGNRAITVH KGDEVKRVAQ GNLTETIAKA RGTTANTVSV QALAGDAGPG
KQSYQATDEI EHRVGESVVT LKPDSIRLTH GASTILINAS GIYIDGPVIH LNQGTAAAPA
AAGTGATATA ATAASAVKTG LGDDVDALVA QSPSLQKDLL RLEKDDWKIK YGAPGKGSFA
TRGDEQTITL DGNLKGNALA TTQTLAHEVG HATYAFKPDY SSKAAYVNGT LADEGAATMN
NVKIQREILA KGGQDIGIAG NSANHAAYNK AYDQFLKDGN AEAARQAIGA QFGKGEITSN
THQPYADYYG STYDKSFPPK K
|
|---|
| |