| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc3312 |
|---|
| Symbol | |
|---|
| ID | 1222176 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 3573762 |
|---|
| End bp | 3574730 |
|---|
| Gene Length | 969 bp |
|---|
| Protein Length | 322 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 637239729 |
|---|
| Product | putative lipase protein |
|---|
| Protein accession | NP_521431 |
|---|
| Protein GI | 17548029 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0657] Esterase/lipase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0232342 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.357874 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGTCG ATCCCCAGAT CCTGCAGTTC CACCAACGCC TTGCCGAACG GTTCGGCGCC
TTGCCGCTGC CGGCCGACGC GCTGGCCCGG CGCGCACGCT TCGCAGCCGT CGCCGAGGTC
TTGGCGCGGC CGGATCCCGA GGGGATCGAG GCGTCGGACC TGACCCTGCC GCTGCCGGGC
CGCACGCTCG ATGCGGTGAT GTTCCGGCCG CGCAGCGTGC AGCGTCCGCG CCTGCTGGTG
TGGTTCCATG GCGAAGGCTG GATGGTGGGG GCCGCGCGCA CCACGCACCG CCTGATGTGC
GCGCTGCTGG CGGCCGACAC CGGCTGCGCG GTGATCAGCG TCGACTATCG CCTCGCGCCT
GAGCATCCGT TTCCGGCGCC CACCGACGAT GCGCGCGATG CGCTGGCTTA CCTGGCGGAG
CAGCGGTTGC ATCTGTCGCT CGATCCGGAT TTCCTGGCCG TGGGCGGGGA CAGCGCGGGC
GGGCATCTGG CGGCGCAGGC CGCGCAAGCG GTGCACGACA GGGTGCGGCA GGGCCTCGTG
ACGGCGCAGC TGCTGGTCTG TCCCGCTACC ATGCCGGCCT TCGGCAGCGA GAGCTACAGC
GCCTTTGCGC AGGGCCCGGG CCTGACGCGC GACGAAATGC GCTGGTACTG GGCGCAGTTC
ATCGGCGAGG CGGCGCTCGA TCGGCCGCTG GCCGAGCAGG ATGCGCGCCT CTTCCTGATG
GCCGATCCGC CCGCTCACCT GCCGCCCGAC ACGGTGGTGA TCGTGGCCGC GCACGACGTG
CTGCGCGACG ATGGTCTGGC CTACGCCGAC CACCTTGTGC AGCACGGTGC CCAAGTCGTC
ACCATCGAGG CTTCGGGCAT GACCCACGGC TTTGCGCGCC TGCAGCCCGA AGCGGAGCGG
GCACGCGAAT GGATGCGCCG CGCGGCGCAC GCTTTCGTGG GAATGATCGG GGGGGATGCC
GCCGGCTGA
|
|---|
| Protein sequence | MAVDPQILQF HQRLAERFGA LPLPADALAR RARFAAVAEV LARPDPEGIE ASDLTLPLPG
RTLDAVMFRP RSVQRPRLLV WFHGEGWMVG AARTTHRLMC ALLAADTGCA VISVDYRLAP
EHPFPAPTDD ARDALAYLAE QRLHLSLDPD FLAVGGDSAG GHLAAQAAQA VHDRVRQGLV
TAQLLVCPAT MPAFGSESYS AFAQGPGLTR DEMRWYWAQF IGEAALDRPL AEQDARLFLM
ADPPAHLPPD TVVIVAAHDV LRDDGLAYAD HLVQHGAQVV TIEASGMTHG FARLQPEAER
AREWMRRAAH AFVGMIGGDA AG
|
|---|
| |