| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc2985 |
|---|
| Symbol | |
|---|
| ID | 1221839 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 3216919 |
|---|
| End bp | 3218106 |
|---|
| Gene Length | 1188 bp |
|---|
| Protein Length | 395 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637239393 |
|---|
| Product | putative transmembrane cytochrome C-type biogenesis transmembrane protein |
|---|
| Protein accession | NP_521106 |
|---|
| Protein GI | 17547704 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0755] ABC-type transport system involved in cytochrome c biogenesis, permease component |
|---|
| TIGRFAM ID | [TIGR03144] cytochrome c-type biogenesis protein CcsB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGCGA CCAACCTCCC CCAACCGTCC GCCCCGGCCG ATCTGGGTGC ACTGCAGCGG
CCGTCCTACT TCCGTCGTCT CGGCCCGTTC GACTGGCTGT TCGCCGCGCT GCTTGCCCTG
GGCGCCGGCT ATGCGTTCTC GCGCTATGGC GCCTATATGG ACGGCTATGA GCGGGGCATC
CTGGTGGCGG CGGTTCCGGC CTTCGCCTGG CTGGGCTGGA CGTGGAAGCC GGTGCGGACG
CTGATGATCG GACTGGCCGT GCTGTCGCTG TTCGCCATCG CGCAGTACAG CGGTCCGAAC
GGGCCGGAGC TGGCCCGCGC CGACCGCGTG TTCTTCCTCA AGTATTTCCT GGCCAGCCAG
TCGGCCATCC TGTGGATGAG CGCGCTGATC TTCCTGTCGA CGCTGTTCTT CTGGGCGGGG
CTGGCGGCGC GCTGGCCCGC GGGCGGCGCG ATCGGCAGCA AGCTGTGCTG GGCGGCCGTG
GTGCTGGGCC TGACCGGCAT GCTGGTGCGC TGGTACGAGT CCTACCTGGT GGGGGCGGAT
ATCGGCCACA TTCCCATCTC GAACCTGTAC GAGGTGTTCA TCCTCTTCAC GCTGATCACC
TCGCTGTTCT ACCTGTATTA CGAGCAGCGC TACCGGACGC GCGCGCTGGG CCCGTTCGTG
ATGCTGGTGG TGTCGGCGGC GGTGGGCTTC CTGCTGTGGT ACACGGTGTC GCGCGGCGCG
CAGGAGATCC AGCCGCTGGT GCCGGCGCTG CAGAGCTGGT GGATGAAGAT CCACGTGCCG
GCGAACTTCA TCGGCTACGG GACGTTCGCG CTGGCCGCCA TGGTTGGGGC GGCCTATCTG
CTCAAGGAGC ACGGCGTGCT GGCCGACCGC CTGCCGTCGC TGGAGGTGCT CGATGACGTC
ATGTACAAGG CCATCACCGT CGGCTTTGCC TTTTTCACCA TCGCCACCAT CCTCGGCGCG
CTGTGGGCGG CCGACGCCTG GGGCGGTTAC TGGAGCTGGG ATCCGAAAGA GACCTGGGCG
CTGATCGTCT GGCTGAACTA TGCGGCCTGG CTGCACATGC GGCTGATGAA GGGGCTGCGC
GGCCGGATGG CGGCGTGGTG GGCACTGGTC GGCCTGCTGG TGACGACTTT TGCCTTCCTG
GGCGTGAACA TGTTCCTGTC CGGCTTGCAT AGCTACGGCG AACTCTGA
|
|---|
| Protein sequence | MEATNLPQPS APADLGALQR PSYFRRLGPF DWLFAALLAL GAGYAFSRYG AYMDGYERGI
LVAAVPAFAW LGWTWKPVRT LMIGLAVLSL FAIAQYSGPN GPELARADRV FFLKYFLASQ
SAILWMSALI FLSTLFFWAG LAARWPAGGA IGSKLCWAAV VLGLTGMLVR WYESYLVGAD
IGHIPISNLY EVFILFTLIT SLFYLYYEQR YRTRALGPFV MLVVSAAVGF LLWYTVSRGA
QEIQPLVPAL QSWWMKIHVP ANFIGYGTFA LAAMVGAAYL LKEHGVLADR LPSLEVLDDV
MYKAITVGFA FFTIATILGA LWAADAWGGY WSWDPKETWA LIVWLNYAAW LHMRLMKGLR
GRMAAWWALV GLLVTTFAFL GVNMFLSGLH SYGEL
|
|---|
| |