| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc2922 |
|---|
| Symbol | |
|---|
| ID | 1221775 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | + |
|---|
| Start bp | 3151699 |
|---|
| End bp | 3153798 |
|---|
| Gene Length | 2100 bp |
|---|
| Protein Length | 699 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637239329 |
|---|
| Product | putative outer membrane receptor signal peptide protein |
|---|
| Protein accession | NP_521043 |
|---|
| Protein GI | 17547641 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAGCGC GGCCGGCCGG CGTGCTGTGG ATGGCATTGG GATACGGCAT GGCCGGCCCG
CTGAGCGCGC TCGCGGGCGG ACTCCAGCAG CCCGAGGTCC AGCTCGAGAC GACCACCGTC
GTCGGGTCCG CCGCCGCCGC GGCCGCCACC GGCGAAGCCG CCAGCCAGGG CTATGTGCCG
CGTGCCCAAC TGGAGAACCG CCCCCTGCTG CGCCCCGGCG AACTGCTCGA GACCGTCCCC
GGCCTGATCG TCACGCAGCA CAGCGGCGAC GGCAAGGCCA ACCAGTACTT CCTGCGCGGC
TTCAATCTCG ATCACGGCAC CGATCTGGCC ACCACGGTGG CCGGCATGCC GGTCAACATG
CGCACGCACG CGCACGGCCA GGGCTACACC GATCTCAACT TCCTCATCCC GGAACTGGTC
AGCGGCATCG CCTACAAGAA AGGCACCTAC TTCGCAGAGG AAGGCGACTT CTCGGCCGCC
GGCGCCGTCC GGATCGACTA CGCCGACAAG CTGCCGCACG GCCTCGCCCA GTTCGAGCTG
GGCGAATACG GCTACCGGCG CGGCCTGCTC GCCGACTCGC GCGCGGTCGG GCCGGGCACG
CTGCTGTACG GCTTCGAGTG GCTGGGCGAG AACGGCCCGT GGGTCGTGCC GGAAGGCGTG
CACAAGCTCA ACGGCGTGCT GCGCTACACC CTGCCGCTGG GCGGCGGCGA GCGCGTCACC
GTGACGGGCA TGGCCTACCG GAACACCTGG CAATCGACCG ACCAGGTGCC GCAACGCGCC
ATCGACCAGG GCCTGATCGC CCGCTTCGGC GCCATCGATC CGACCGACGG CGGCATGGCC
TCGCGCTACA GCCTGTCGGC CGACTGGCTG CGCCCGCTGG CCGACGGGCA GCTCAAGGCC
AACGCCTACG TCATCAAGAG CCGGCTGACG CTGTTCTCGA ATTTCACCTA TGCGCTCGCC
AACCCCGTGC TGGGCGACCA GTTCGAGCAG TTCGAGAACC GGGTCACGAC CGGCATCAAC
GCCTCGCGCA CGTGGTTCGG CGAGCTTGCC GGGCACGACA GCGAAACCGA GATCGGCTCG
CAGACGCGCT ACGACCGGCT CGACCCGATC CTGCTCGCCG ACACGGTGGC GCGGCAGCCC
TACGCGCTGG TCCGCAGCGA CACCGTCGAC GAGACCAGCA CGGCGCTCTA CCTGCGCAAC
AGCATCCAGT GGCGGCCCTG GCTGCGCACC CTCGCCGGCT TGCGCGCCGA CCAGTTCTGG
TACCGCGTCG GCAGCAGCAA CCCGCGCAAT TCGGGCAGCG GCGCCGAGCA TATCGTCGCC
CCCAAGCTGG GCGTGGTGCT GTCGCCGACG GCCAGGACCG ACGTGTTCGT CAACTGGGGA
CGCGGCTACC ACAGCAACGA CGTGCGCGGC GCCACCACCA CCGTCGATCC GGCCTCGGGC
AATCCGGTGC GCAAGGTCAG CGTGCTGGTG CCGGCCACCG GCTACGAGGT CGGCGTGCGG
ACGAAAGCGC TGGCGCGCGA CCTGCAGCTG TCCGCCTCGC TGTGGCGGCT GGATATCGGC
TCGGAGCTGG TGTTCGCCGG CGACACCGGC ACCACGCAGC CCAGCCGTCC CAGCCGGCGC
ACCGGCGTGG AGCTGGCGGC GTACTACAAG CCGTCGCCCG AGCTCATCCT CGACGCCGAT
GCCGCCTTCT CCCGCGCGCG CTTCCGCGAT GCCGATCCGG CCGGCGACCA CATCCCCGAG
GCAATCCAGA CCACCGCCTC CGCGGGCATG TCGTGGACAC ACGGCCGCTG GACCCTCGGC
GCCCGCCTGC GCTACTTCGG CCCGCGCCCC CTGATCGAAG ACAACAGCGT GCGCTCGGCC
TCGTCGTTCC TGGTCAACCT GAAGGCCGGC TATCGCGTGC GGAAGAACGT GCGCGTCTTC
GTCGAAGTGC TCAACGCGCT GAACCGCAAG GCCAACGACA TCGACTACGA CTACGCCTCG
CTGCTCAAGG GAGAGACCTC GCCGGTGGAC GCCAGCGGCG CGGCAACCGG CATCAACGAC
CGGCACATCC ACCCGGCCGA GCCGCGCACG GTGCGGGCCG GCATCGCCTG GACGTTCTGA
|
|---|
| Protein sequence | MRARPAGVLW MALGYGMAGP LSALAGGLQQ PEVQLETTTV VGSAAAAAAT GEAASQGYVP
RAQLENRPLL RPGELLETVP GLIVTQHSGD GKANQYFLRG FNLDHGTDLA TTVAGMPVNM
RTHAHGQGYT DLNFLIPELV SGIAYKKGTY FAEEGDFSAA GAVRIDYADK LPHGLAQFEL
GEYGYRRGLL ADSRAVGPGT LLYGFEWLGE NGPWVVPEGV HKLNGVLRYT LPLGGGERVT
VTGMAYRNTW QSTDQVPQRA IDQGLIARFG AIDPTDGGMA SRYSLSADWL RPLADGQLKA
NAYVIKSRLT LFSNFTYALA NPVLGDQFEQ FENRVTTGIN ASRTWFGELA GHDSETEIGS
QTRYDRLDPI LLADTVARQP YALVRSDTVD ETSTALYLRN SIQWRPWLRT LAGLRADQFW
YRVGSSNPRN SGSGAEHIVA PKLGVVLSPT ARTDVFVNWG RGYHSNDVRG ATTTVDPASG
NPVRKVSVLV PATGYEVGVR TKALARDLQL SASLWRLDIG SELVFAGDTG TTQPSRPSRR
TGVELAAYYK PSPELILDAD AAFSRARFRD ADPAGDHIPE AIQTTASAGM SWTHGRWTLG
ARLRYFGPRP LIEDNSVRSA SSFLVNLKAG YRVRKNVRVF VEVLNALNRK ANDIDYDYAS
LLKGETSPVD ASGAATGIND RHIHPAEPRT VRAGIAWTF
|
|---|
| |