| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc2798 |
|---|
| Symbol | |
|---|
| ID | 1221645 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | + |
|---|
| Start bp | 3007652 |
|---|
| End bp | 3008110 |
|---|
| Gene Length | 459 bp |
|---|
| Protein Length | 152 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637239199 |
|---|
| Product | putative signal peptide protein |
|---|
| Protein accession | NP_520919 |
|---|
| Protein GI | 17547517 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4731] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00624822 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.61981 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAACGTC CCCCACACAC CCTGTCGCGC CTGCTGGGCG GCTTGGCATT CGCACTGGCG
GCCGGCGGCG CCTTTGCGCA GGCCGCCTCG CCGGCCGGCA CCTGGAAGAC CATCGACGAT
GCCACCGGCA AGCCCAAGGG CGAAGTGCAG ATCGTCGAGA AGGACGGGGT GTTTTCCGGC
AGGGTCACCA ACATCCTGAA GGAAGAGGAT CGCGCCAAGG TCTGCACCAA GTGCACGGAC
GACCGCAAGG ACCAGCCCAT CGTCGGCCTG ACCATCCTGA AGGATCTGAA GAAGACCGGC
GACAACGAAT GGGCGGGCGG CAATATCCTC GACCCCGAGA ACGGCAAGGT CTACAGCGCC
AAGATGTCGC TGTCGGAGGA CGGCCGGAAG CTGAACGTGC GCGGCTTCCT GGGCATCAGT
CTGCTGGGCC GCACGCAGAC CTGGGTGCGC GAGCAATAG
|
|---|
| Protein sequence | MQRPPHTLSR LLGGLAFALA AGGAFAQAAS PAGTWKTIDD ATGKPKGEVQ IVEKDGVFSG
RVTNILKEED RAKVCTKCTD DRKDQPIVGL TILKDLKKTG DNEWAGGNIL DPENGKVYSA
KMSLSEDGRK LNVRGFLGIS LLGRTQTWVR EQ
|
|---|
| |