Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSc2753 |
Symbol | |
ID | 1221600 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003295 |
Strand | - |
Start bp | 2964743 |
End bp | 2965540 |
Gene Length | 798 bp |
Protein Length | 265 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 637239154 |
Product | short chain dehydrogenase |
Protein accession | NP_520874 |
Protein GI | 17547472 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.26681 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGGCGC CCCCGACATC CTTCCCGCCG CGCCTGGCCG GCAAGGTCGC GCTGGTGACC GGCGCCACGC AGGGCATCGG CGCCGCCACC GCGCGGCTGT TCGCGCGGCA CGGCGCGCGC GTGATCGTCA ATGCGCTGGT GCGCGACGCC GCCGCCGAGG CCTTCGCCGC GTCCATCGGC CACGACGGCA ACGTGCTGCT GGTGCAGGCC GACGTGCGCT ATCGCGACCA GGCCGATGCC ATGGTCGCGG CGGGCGTCGC GCGCTTCGGC GGCATCGACG TGCTGGTCAA CAATGCCGGC ATCAATGTCT TCTCCGATCC GCTCGCGCTG TCCGAGGCGG ATTGGGCGCG CTGCCTGTCG GTCGACCTGG AAGGCGCATG GCATTGCGCG CGCGCCGTGC TGCCGCACAT GCTGGCGCGC GGCGCCGGCA GCATCGTCAA CATCGCTTCG GTGCACGGGC ATAAGATCAT CCCGGGGGCG TTTCCGTATC CGGTGGCCAA GCATGGCCTG ATCGGGCTCA CGCGGGCGCT GGGCATCGAG TACGCGGCGC GCGGCATCCG TGTCAATTCG ATCTCGCCGG GGCTGATCCT CACGCCGATC GCCGAGGCCG GCTTTGCCGC CGCGCCCGAC CCCGAGGCCG AACGCCGCCG CCAGGCCGAC CTGCTGCCGT GCAAGCGCAT CGGCGAGCCG GAGGAGGTGG CCTACACCGC GCTGTTCCTC GCCTCCGACG AGGCGCGCTT CATCAACGCC GCCGACATCC TGATCGATGG CGCTCGCTCG CAGCTGTATC ACGAATGA
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Protein sequence | MTAPPTSFPP RLAGKVALVT GATQGIGAAT ARLFARHGAR VIVNALVRDA AAEAFAASIG HDGNVLLVQA DVRYRDQADA MVAAGVARFG GIDVLVNNAG INVFSDPLAL SEADWARCLS VDLEGAWHCA RAVLPHMLAR GAGSIVNIAS VHGHKIIPGA FPYPVAKHGL IGLTRALGIE YAARGIRVNS ISPGLILTPI AEAGFAAAPD PEAERRRQAD LLPCKRIGEP EEVAYTALFL ASDEARFINA ADILIDGARS QLYHE
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