| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc2679 |
|---|
| Symbol | |
|---|
| ID | 1221526 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 2888589 |
|---|
| End bp | 2889062 |
|---|
| Gene Length | 474 bp |
|---|
| Protein Length | 157 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637239080 |
|---|
| Product | putative type 4 fimbrial pilin related transmembrane protein |
|---|
| Protein accession | NP_520800 |
|---|
| Protein GI | 17547398 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4970] Tfp pilus assembly protein FimT |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.171677 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCACCGC GTTCGGGAAA GCCGTCCTGC CGGGGTGTCA CGCTGCCGGA ACTGCTGGTC
GGGCTTGCCG TGCTGTCGAT TCTCATCGTC ATCGCCGTCC CGTCGTTCTC CGGCCTGATC
GCCACGCAGC GCGCACGCAA TGCTTCGCTC GACCTGTCCG CCGCGATCAC GCTGGCGCGC
AGCGAGGCCG TCAAGCAGAA CACCACGGCC ACGGTCTCCT CGACCGGCAA TTGGGCGACC
GGCTGGGCGC TGGCGGTGAA CTCCACCGTC ATCCGCACCT TTGGTCCCTA CACCGGCGTC
ACGATTGCGC CCAGCAACGG CAATACCTTG TCGATCGGCA ATGATGGCCG GCCGACGGCG
GGCGCCGTCA CGTTTCTTGT CACGCCGACG ACGTCGGCAC AGACGTCTTC GACGATCTGC
GTCCAGGTGG GCGGCACCGG TCGGGTCGCC CTGGTAACGG GAGGTTGCTC ATGA
|
|---|
| Protein sequence | MPPRSGKPSC RGVTLPELLV GLAVLSILIV IAVPSFSGLI ATQRARNASL DLSAAITLAR
SEAVKQNTTA TVSSTGNWAT GWALAVNSTV IRTFGPYTGV TIAPSNGNTL SIGNDGRPTA
GAVTFLVTPT TSAQTSSTIC VQVGGTGRVA LVTGGCS
|
|---|
| |