| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc2404 |
|---|
| Symbol | |
|---|
| ID | 1221250 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | + |
|---|
| Start bp | 2611181 |
|---|
| End bp | 2611846 |
|---|
| Gene Length | 666 bp |
|---|
| Protein Length | 221 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637238804 |
|---|
| Product | putative signal peptide protein |
|---|
| Protein accession | NP_520525 |
|---|
| Protein GI | 17547123 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3471] Predicted periplasmic/secreted protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACCTG CCCTGGCCGC AACCGTTCTG GGAACCGCCG TGATGGCCAC CTCCGCGCTT
GCGCAAACGC CCTCCGCTGC CGCGGGTGGC TGGACACCGC CGTCGGGCGT GCTGTCGCTG
GATGCCCAGG CGGTGGCCGA AGTGCCGACC GACACCGTCA CCCTCACGCT GGGCGCCGAG
CAGGAAGGCG CGGACCCGGG CGCCATCTCC GCGTCACTGT CGCGCAAGGC CGAAGACGTC
ATCGCCCAGG CCAAGCGCAC GGCCGGCGTG CAGGCGGAAA CGGGCGGCTT CAACATCTAC
CCGAACACCG ACCGCAACGG CAAGATCAAC GTGTGGCGCG GCCGAGCCGA GGTACGCATC
ACGTCGAAGG ACTTTGCTGC GGCCTCCAAG CTGGCGGGCC AATTGGCCAA CCAGATGCAA
GTGCAGAACG TCAACTTCAC GCTGTCGCGC GAGGCACGCA CGGCCGCTGA GACCAAGCTG
GTCGACCTGA CCTGCCCCCG GCAACAGGGC CAGAGGGCTT CTAGTAAAGC CCAATTCAAG
TTTGCTCCTG AGCGGCAGGA GCCACCGCTG TTGCTCGATA CCGCGCTGCG AATTCTGCAG
GCGGTTGGTA ATTCAAGGCG CTGTGCGGCC GCGCCTCGTT GTAATCCTGG CGCCACGCCG
CGATGA
|
|---|
| Protein sequence | MKPALAATVL GTAVMATSAL AQTPSAAAGG WTPPSGVLSL DAQAVAEVPT DTVTLTLGAE
QEGADPGAIS ASLSRKAEDV IAQAKRTAGV QAETGGFNIY PNTDRNGKIN VWRGRAEVRI
TSKDFAAASK LAGQLANQMQ VQNVNFTLSR EARTAAETKL VDLTCPRQQG QRASSKAQFK
FAPERQEPPL LLDTALRILQ AVGNSRRCAA APRCNPGATP R
|
|---|
| |