Gene RSc2344 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc2344 
Symbol 
ID1221190 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand+ 
Start bp2543156 
End bp2543779 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content70% 
IMG OID637238744 
Producthypothetical protein 
Protein accessionNP_520465 
Protein GI17547063 
COG category[S] Function unknown 
COG ID[COG2860] Predicted membrane protein 
TIGRFAM ID[TIGR02019] bacteriochlorophyll 4-vinyl reductase 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.740415 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.167171 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACGAAA GCCGCCTGCT GCTGGTGATG CACTGGACGG AGATCCTCGC GGTCTTCTCG 
TTCGCCGTCT CGGGCCTGGC CGAGGCGCGG CGGCGCCGGC TCGATGCCGT GGGCGCCTTC 
ATCGTCGCAT TCCTCACGGC ATTCGGCGGC GGCACGCTGC GCGACCTGCT GCTCGACCGC 
CGGCCCTTCT ACTGGGTCGA GCACGAGCAG TATCTGCTGG CGCTGTTCGT GATGAGCCTG 
TTCGCCAACC GGGTGATCCG GCTGGTCAGC CAGCTGGTGT CGGACCGCGT GCTGATCGTG 
GCCGATGCGG TCGGCCTGGG GCTGTTCGGG GTGCTCGGCA CGCAGCTGGC GCTGGATGCC 
GGCGTGCCGG TGTTCGTGTC GGTGATGATG GGCGTGATCA CGGCCGCGTT CGGCGGCCTG 
CTGCGCGACG TGGTGTGCAA CGAAATCCCG ATGCTGCTGC GGGACAACCG CCCGTACGCG 
ACCTGCGCCT TCCTCGGATG CTGGCTCTAC GTGGGGCTGA CCCACACCAG CCTGCAGCCG 
AGCGTGGCCG TGGTGGTCGC CACGCTGGCG ATCGTGGCGG GCCGGCTGGC GACGCTGCGC 
TGGAACATCA CCCTGCCGCG CTGA
 
Protein sequence
MHESRLLLVM HWTEILAVFS FAVSGLAEAR RRRLDAVGAF IVAFLTAFGG GTLRDLLLDR 
RPFYWVEHEQ YLLALFVMSL FANRVIRLVS QLVSDRVLIV ADAVGLGLFG VLGTQLALDA 
GVPVFVSVMM GVITAAFGGL LRDVVCNEIP MLLRDNRPYA TCAFLGCWLY VGLTHTSLQP 
SVAVVVATLA IVAGRLATLR WNITLPR