| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc2303 |
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| Symbol | |
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| ID | 1221148 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | - |
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| Start bp | 2502818 |
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| End bp | 2505187 |
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| Gene Length | 2370 bp |
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| Protein Length | 789 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637238702 |
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| Product | GSPD-like protein |
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| Protein accession | NP_520424 |
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| Protein GI | 17547022 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.109724 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.194773 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACCGT CCTGCCGTCC GGGTGCGGCG CTTGAAGCGG ACCGCTGCCC ATCGTTCCCC
GATCGAAGCG CCGCCACGCC GCACCGCGGT CTGGCGTGGG CCATGGCTGT GGTCCTGATC
GGCGGGTGCG CCACTACCAG GGACATCGAG CAGCTGCAGA CCACCAGCCA GCGGGAGCCG
ACCAACGCGC AGCTCAAGCT CAAGTACATG GATGAGCGCG ACCGCCAGGT CAAGGACTTG
CTCGACGGGG CGGACCGGCT GCGCCTCATC CACGATTTCG ACCGGGCCCA GGTCCTGCTC
CTGCAAGCCC TGCGGCTGGA TCCGGGCAAC GAGCGCGGCA GGCGCATCGC CGCCGCCATC
GATGTGGACC GGCGCAACGG CGCCGTGCTC CAGGAAGCGG AGCGGATGAT GGCGCGCGGC
TCGTATGACG GCGCGGCCGA GCGCGTCGAG CGCGTGCTCG CGGAGACTCC GAACGATGCC
GGCGCATTGC GCCTCTACCG CGAGATCAGC GAGAAGCGGC GCCTGCAAAA GCAGGCCGCC
GAAGAGAAGA ACGCCGCGGC GTCGATCATG CGCAAGCCGG TGTCGCTGCA GTTCCGGGAT
GCCAACGTGC GCATGGTGTT CGAAGCGCTG TCGCGCACGA CGGGCCTGAG CGTCATCTTC
GATCGCGATG TGCGCGTCGA TCTGAAGACC ACGATCTTCG TCTCGAATGC CTCGCTCGAA
GACACGGTCG ACATGATCCT GCTGCAGAAC CAGCTCGCGA AGAAGGTGCT CAACGCCAAC
ACGGTGTTCA TCTATCCGGC CACGCCGGCC AAGCAGCAGG AATACCAGGA CCTCAAGGTG
CGCACGTTCC AGCTGTCCAA CACGGATGCC AAGCACATCG ACACGCTGCT GAAGAATCTC
CTGAAGATCA AGGAGATCGT CACCGACGAG CGCGCCAATA CCGTGTCGAT CCGGGCGACG
CCCGAGACCA TCCGCGTGGC CGAGCGGATG ATCGCCGCGC AGGATCTGCC CGAGCCGGAG
GTGATGCTGG AAGTCGAGGT GCTGGAGGTG TCGCGCGACC GGCTCACCGA TCTGGGCATC
GACTGGCCGA ACAGCTTCTC GCTCGGGACG CCGTCCTCGG CAAGCACGTG GGGCGCGCTG
CATCACCTGA CGGTCAATCA GCTCACGGCC AGCGGGCTGT CGGTGACGGC CAATCTCAAG
CTGACCGATA CCGACGCGAA CCTGCTGGCG AGCCCGCGCA TCCGCACGCG CAACAAGGAG
AAGGCCAAGA TCCTGATCGG CGACAAGGTG CCCGTGATCT CGAGCTCCAG CGTGCCGAGC
ACCAGCGGCC CGGTCTATTC GCAGTCGATC CAGTACCTGG ATGTCGGCAT CAAGCTGGAG
GTCGAGCCCC AGGTGTACCG GGACAACGAT GTCGGCATCA AGATGAGCCT CGAGGTCAGC
AACATCACCC AGATCATTTC GAGCAGCAAC GCGCAGACCG GCCTGAGCTC GCTCGCTTAC
CAGATCGGCA CCCGCAATGC GTCGACGACG CTGCGGCTCA AGGACGGCGA GACCCAGATT
CTCGGCGGCC TGATCCAGGA TGAGGATCGG GACGCGGCCA ACAAGGTCCC GGGGCTTGGG
CAGTTGCCGG TGCTCGGGCG CCTGTTCTCG AACCACAACG GCGACCACAA GAAGACCGAG
ATCGTGCTGC AGATCACGCC GCATATCGTG CGGCCGCAGC TGGCGGCGGA TGCGGATACG
CGCGAGATCT GGTCCGGCAC CGACAGCACT GTGCGCACCG AGCAATTGCG GCTCGATCCG
CCGGGCGTGG CCGCGCCTGC CACACCTGCT GCGCCTGCTG CGCCTGCTGC GGCGCTTCCG
GCGCCGGCCG CCGGGGTGGC GGTCGTCTCC CCGGGCGCCG TCGGCGGCGG TACCACGGGT
GGCGAACAGA CGCCCAAGGC TGCCGCGCCG GCCGCGGCCG GCGGCGTGGT TCCGCCCAAC
GGCGCGTTTG GGCAGCCGCC CGCCGCGCCG CGCACGACGC CGCCGCCGGC AATGTTCGGT
GGCCGCTTCA TGACCACGGT GCCGCCGCCC GAAGGGGTTG TGCCACCGGC GCCGCCGGCA
CCGGCAGCCG CGCCTGCGGC GGTGGCAGCG CCGGCAGCGG CGGCACCAGC AGCACCGGCG
GCTGGCACGG CCGGGCCCGA GGCAGCGGCA GCGGTCAGCC CGACCGAGGC CGCACCGCCC
GCACCCGCGC CGGCAGCGCC ATACACGCCA GCGCCCGCCG CGCCCGCCGC CGCGCCGCCA
GCGGCATCGC CGCCGCCGAT CGTGCCGACG CCGCCGAGCG ACATGCCGAG CGATAACCCG
TTGCATCCGA TCCCGACGGG GGCGTACTGA
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| Protein sequence | MKPSCRPGAA LEADRCPSFP DRSAATPHRG LAWAMAVVLI GGCATTRDIE QLQTTSQREP
TNAQLKLKYM DERDRQVKDL LDGADRLRLI HDFDRAQVLL LQALRLDPGN ERGRRIAAAI
DVDRRNGAVL QEAERMMARG SYDGAAERVE RVLAETPNDA GALRLYREIS EKRRLQKQAA
EEKNAAASIM RKPVSLQFRD ANVRMVFEAL SRTTGLSVIF DRDVRVDLKT TIFVSNASLE
DTVDMILLQN QLAKKVLNAN TVFIYPATPA KQQEYQDLKV RTFQLSNTDA KHIDTLLKNL
LKIKEIVTDE RANTVSIRAT PETIRVAERM IAAQDLPEPE VMLEVEVLEV SRDRLTDLGI
DWPNSFSLGT PSSASTWGAL HHLTVNQLTA SGLSVTANLK LTDTDANLLA SPRIRTRNKE
KAKILIGDKV PVISSSSVPS TSGPVYSQSI QYLDVGIKLE VEPQVYRDND VGIKMSLEVS
NITQIISSSN AQTGLSSLAY QIGTRNASTT LRLKDGETQI LGGLIQDEDR DAANKVPGLG
QLPVLGRLFS NHNGDHKKTE IVLQITPHIV RPQLAADADT REIWSGTDST VRTEQLRLDP
PGVAAPATPA APAAPAAALP APAAGVAVVS PGAVGGGTTG GEQTPKAAAP AAAGGVVPPN
GAFGQPPAAP RTTPPPAMFG GRFMTTVPPP EGVVPPAPPA PAAAPAAVAA PAAAAPAAPA
AGTAGPEAAA AVSPTEAAPP APAPAAPYTP APAAPAAAPP AASPPPIVPT PPSDMPSDNP
LHPIPTGAY
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