| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc2159 |
|---|
| Symbol | rph |
|---|
| ID | 1221002 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | + |
|---|
| Start bp | 2342256 |
|---|
| End bp | 2342972 |
|---|
| Gene Length | 717 bp |
|---|
| Protein Length | 238 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637238556 |
|---|
| Product | ribonuclease PH |
|---|
| Protein accession | NP_520280 |
|---|
| Protein GI | 17546878 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0689] RNase PH |
|---|
| TIGRFAM ID | [TIGR01966] ribonuclease PH |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0019254 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGACCCA GTGGCCGCCA GCCCGACCAA CTCCGTCCCG TCACCCTCAC CCGCCATTAC
ACGCGCCACG CCGAAGGCTC GGTGCTGGTG TGCTTCGGCG ACACGCACGT GCTGTGCACG
GCCAGCGTGC TGCCCAAGGT GCCGCCCCAC AAGAAAGGCA GCGGCGAAGG CTGGGTGACG
GCCGAATACG GCATGCTGCC GCGCTCGACG CACACCCGCT CCGACCGCGA AGCGGCGCGC
GGCAAGCAGA GCGGCCGCAC ACAGGAAATC CAGCGGCTGA TCGGCCGGGC GATGCGCTCG
GTGTTCGATC TGTCCGCGCT GGGCGAGCAC ACCATCCACC TGGACTGCGA CGTGCTGCAG
GCCGACGGCG GCACGCGCAC GGCCAGCATC ACCGGCGCCT TCGTGGCGGC CCATGACGCG
ATCTCGGTGA TGCGCAAGAA GGGCCAGTTG ACCGGCGAGC CGATCCGCGA CTTCGTTGCC
GCCGTGTCGG TGGGCGTGGT CGATGGCGTG CCGGTGCTCG ATCTCGACTA CCCCGAAGAC
GCGTCCTGCG ACACCGACAT GAACATCGTG ATGACCGGCG CCGGCGGCTT CGTGGAAGTC
CAGGGGACGG CCGAAGGAAC GCCGTTCACG CGCACCGAGA TGGACGCGCT GCTGGGCCTG
GCCGACCACG GCATCCGCAC GCTGATCGGC CTGCAGAAGC AGGCGCTCGG CCTGTGA
|
|---|
| Protein sequence | MRPSGRQPDQ LRPVTLTRHY TRHAEGSVLV CFGDTHVLCT ASVLPKVPPH KKGSGEGWVT
AEYGMLPRST HTRSDREAAR GKQSGRTQEI QRLIGRAMRS VFDLSALGEH TIHLDCDVLQ
ADGGTRTASI TGAFVAAHDA ISVMRKKGQL TGEPIRDFVA AVSVGVVDGV PVLDLDYPED
ASCDTDMNIV MTGAGGFVEV QGTAEGTPFT RTEMDALLGL ADHGIRTLIG LQKQALGL
|
|---|
| |