| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1974 |
|---|
| Symbol | |
|---|
| ID | 1220814 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | + |
|---|
| Start bp | 2148369 |
|---|
| End bp | 2149334 |
|---|
| Gene Length | 966 bp |
|---|
| Protein Length | 321 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637238368 |
|---|
| Product | nodulation ABC transporter NodI |
|---|
| Protein accession | NP_520095 |
|---|
| Protein GI | 17546693 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1131] ABC-type multidrug transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR01288] ATP-binding ABC transporter family nodulation protein NodI |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.167166 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.202305 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCGATACG AGCAACCGCC CGGCCCGGGC ATCGGCAGCA CGCCGATCCT CAGCGTCGAA
GGACTGCGCA AGCGCTATGG CGAGCAGACG GTGGTCGACG GCCTGAGCTT TTCGGTCCGC
CGCGGCCAGT GCTTCGGACT GCTCGGGCCC AACGGCGCAG GCAAGACCAC CACGCTGCGC
ATGCTGCTCG GCATGACGAT GCCCGATGCG GGCACCCTGC AGCTGTGCGG CGAAACCATC
CCCGGACATG CGCACCGCGC GCGCATGCGC GTGGGCGTGG TGCCGCAGTT CGACAACCTC
GACCCCGATT TCACCGTCTC GGAAAACCTG CAGATCTTCG GCCGCTACTT CGGCCTGCCT
GCCGCGACCA TCCGCAAGCG GATGCCGGGC CTGCTGGAAT TCGCGCGGCT CGAGCAAAAG
GCCGACGCGC CCGTGCGCGC CCTGTCGGGC GGGATGCGGC GGCGGCTGAC GGTCGCGCGC
TCGCTGATCA ACGACCCCGA TGTCCTGGTG ATGGACGAGC CCACCACCGG GCTCGACCCG
CAGGCGCGCC ACCTGATCTG GGAACGCCTG CGCTCGCTGC TGGCCTCCGG CAAGACCATC
CTGCTGACCA CGCACTTCAT GGAAGAGGCC GAGCGCCTCT GCGACGAACT GTGCGTGATC
GACAACGGCC GCAAGATCGC CCAAGGCAAG CCGCACGAGC TGATCACCCA TGAGATCGGC
TGTGATGTCG TGGAGGTCTA CGGTGACGAC CTGCCCGCGC TGCGCACGCT GCTCGCCCCC
CTGGCCGAGC GCGTCGAAGC CAGCGGCGAA ACGCTGTTCT GCTACGCCCG CGATCCGCAG
CCGCTGGTGG CCACCCTGCG CTCGCAGACC GAGACGCACG CCATGCCCGG CCTGCGCTAC
CTGCACCGCC CGGCCAACCT CGAAGATGTG TTCCTGCGCC TGACCGGCCG CGAGATGCGC
GACTGA
|
|---|
| Protein sequence | MRYEQPPGPG IGSTPILSVE GLRKRYGEQT VVDGLSFSVR RGQCFGLLGP NGAGKTTTLR
MLLGMTMPDA GTLQLCGETI PGHAHRARMR VGVVPQFDNL DPDFTVSENL QIFGRYFGLP
AATIRKRMPG LLEFARLEQK ADAPVRALSG GMRRRLTVAR SLINDPDVLV MDEPTTGLDP
QARHLIWERL RSLLASGKTI LLTTHFMEEA ERLCDELCVI DNGRKIAQGK PHELITHEIG
CDVVEVYGDD LPALRTLLAP LAERVEASGE TLFCYARDPQ PLVATLRSQT ETHAMPGLRY
LHRPANLEDV FLRLTGREMR D
|
|---|
| |