Gene RSc1963 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc1963 
SymboltonB 
ID1220803 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp2142146 
End bp2142811 
Gene Length666 bp 
Protein Length221 aa 
Translation table11 
GC content69% 
IMG OID637238357 
ProductTONB transmembrane protein 
Protein accessionNP_520084 
Protein GI17546682 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0810] Periplasmic protein TonB, links inner and outer membranes 
TIGRFAM ID[TIGR01352] TonB family C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.425469 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTCACC CTCGTACCCT CAAGATCCTC GTCGTGGTGC TGCTGATGCA CGTGGGTGTG 
CTGACGCTGA TCCAGCTCGG CCTGATCGCA TCGCCGCTGC GCCAGGAACC ACCACCCGAA
CTGCAGGTGA ACATCATCCC GGACACGCCG CCGCAGCCGG TGCGCCAGCC GGAACCGCCC
AAGCCTGAGC CCGCCAAGCC CGCGCCGCCC AAGCAGGTGA ACATCGTCAA GCCCGTGCCG
CAACCCAAGC CGGCTCCGAC GCCGGCACCG GCCTTGCCGC CCTCCGATAC CGCACCCGTG
GTGCCGGCCG CACCGCCCGC GCCTCCCGCC CCGCCGGTGG AGGCCGCACC CGCGCCGGCT
CCGGCCCCGG TCCAGTCGGG CCCGATCAAC GTCGGCATCA ACGACATCCA GTGCAGCAAC
CCGCCGCTCG TCTACCCGAC CATGTCGCAG AAGATGGGCG AGGAAGGCCG CACCCTCGTC
AAGATCACCA TCGGCCCCGA GGGCGACGTG GTCAACGCGC TGGTGGCCAC CACCAGCGGC
TCCGCGCGCC TGGACCGCGC CGCGCTCGAA TCGGCCCGCA GCCTCCATTG CTCGCCATAC
AAGCAGAACG GCCGCGCCAT GACCGTGGTG GCCAACAAGC CGTTCGTCTT CAAGCTCGAC
AATTAA
 
Protein sequence
MIHPRTLKIL VVVLLMHVGV LTLIQLGLIA SPLRQEPPPE LQVNIIPDTP PQPVRQPEPP 
KPEPAKPAPP KQVNIVKPVP QPKPAPTPAP ALPPSDTAPV VPAAPPAPPA PPVEAAPAPA
PAPVQSGPIN VGINDIQCSN PPLVYPTMSQ KMGEEGRTLV KITIGPEGDV VNALVATTSG
SARLDRAALE SARSLHCSPY KQNGRAMTVV ANKPFVFKLD N