Gene RSc1963 details

Gene Information

• Locus tag: RSc1963
• Symbol: tonB
• ID: 1220803
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Ralstonia solanacearum GMI1000
• Kingdom: Bacteria
• Replicon accession: NC_003295
• Strand: +
• Start bp: 2142146
• End bp: 2142811
• Gene Length: 666 bp
• Protein Length: 221 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 637238357
• Product: TONB transmembrane protein
• Protein accession: NP_520084
• Protein GI: 17546682
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG0810] Periplasmic protein TonB, links inner and outer membranes
• TIGRFAM ID: [TIGR01352] TonB family C-terminal domain

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 14
• Fosmid unclonability p-value: 0.425469
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGATTCACC CTCGTACCCT CAAGATCCTC GTCGTGGTGC TGCTGATGCA CGTGGGTGTG 
CTGACGCTGA TCCAGCTCGG CCTGATCGCA TCGCCGCTGC GCCAGGAACC ACCACCCGAA 
CTGCAGGTGA ACATCATCCC GGACACGCCG CCGCAGCCGG TGCGCCAGCC GGAACCGCCC 
AAGCCTGAGC CCGCCAAGCC CGCGCCGCCC AAGCAGGTGA ACATCGTCAA GCCCGTGCCG 
CAACCCAAGC CGGCTCCGAC GCCGGCACCG GCCTTGCCGC CCTCCGATAC CGCACCCGTG 
GTGCCGGCCG CACCGCCCGC GCCTCCCGCC CCGCCGGTGG AGGCCGCACC CGCGCCGGCT 
CCGGCCCCGG TCCAGTCGGG CCCGATCAAC GTCGGCATCA ACGACATCCA GTGCAGCAAC 
CCGCCGCTCG TCTACCCGAC CATGTCGCAG AAGATGGGCG AGGAAGGCCG CACCCTCGTC 
AAGATCACCA TCGGCCCCGA GGGCGACGTG GTCAACGCGC TGGTGGCCAC CACCAGCGGC 
TCCGCGCGCC TGGACCGCGC CGCGCTCGAA TCGGCCCGCA GCCTCCATTG CTCGCCATAC 
AAGCAGAACG GCCGCGCCAT GACCGTGGTG GCCAACAAGC CGTTCGTCTT CAAGCTCGAC 
AATTAA 

 

Protein sequence

MIHPRTLKIL VVVLLMHVGV LTLIQLGLIA SPLRQEPPPE LQVNIIPDTP PQPVRQPEPP 
KPEPAKPAPP KQVNIVKPVP QPKPAPTPAP ALPPSDTAPV VPAAPPAPPA PPVEAAPAPA 
PAPVQSGPIN VGINDIQCSN PPLVYPTMSQ KMGEEGRTLV KITIGPEGDV VNALVATTSG 
SARLDRAALE SARSLHCSPY KQNGRAMTVV ANKPFVFKLD N