| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1887 |
|---|
| Symbol | |
|---|
| ID | 1220726 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | + |
|---|
| Start bp | 2071488 |
|---|
| End bp | 2073395 |
|---|
| Gene Length | 1908 bp |
|---|
| Protein Length | 635 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 637238280 |
|---|
| Product | putative acyl coenzyme A thioester hydrolase protein |
|---|
| Protein accession | NP_520008 |
|---|
| Protein GI | 17546606 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4950] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.037532 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.647749 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCCGCTT CGCCCGCCTT TGCGCTCAGC GTCGCACCGG CCGACGACCT GATCGACGTG
CCGCGCCGCA TCGTCGTGAC GGGGCTGGTG CCCGGCGCGC AGGTCGATCT CGCCGCACGG
ACGCTGCGCG GGCATGCGGT GCCGTGGTGC AGCCGCGCCG CCTTCATCGC CGATGCCGAC
GGCACCGTCG ATCTGTCGCG CGATGCGCCC GTCTGCGGCG ACTACACCGG CGTCGACCCG
ATGGGCCTGG TCTGGAGCCA GCGCCCCGAG GGCGGCACAT CGCGCGAGGT CTTCGCGAGC
GCCGCCACCG AGCCGCTGAC CACGACGCTG ACGGCCACCG CGCACGGCAC GCCGGCCTGC
GCACGCTTCG TGCAGCGGCT GGCCGCGCCG GGCCTGACGC GCCACGACGT CCGCGACGAC
GGCCTGGTCG GGACGCTGTA CCTGCCGGAC CCGCACGCCC ACCCCGGCCC GCGGCCGGCG
GTGATGGTGC TCAACGGCTC CGGCGGTGGC ATCAACGAAC CGCGCGCGGC GCTGTATGCC
TCGCACGGAT ACGCTGCCTT CGCGCTGGCG TATTTCAAGG CGCCGGGGCT GTCGGACTAC
ATCTCAAACA CTCCGCTCGA ATACTTCGAG CGCGGCCTCG CCTGGCTGCG CCGGCGCGTG
CGACCGCTGC ACGATTTCGT GGCGGTGAGC GGCCAGTCGC GCGGCGGCGA GCTGGCGTTG
CTGCTCGGGG CGACGTTTCC CGCAGCCGTC TCGGCGGTGA TCGGCTACGT GCCGGGTGCC
GTGGTGCACA GTGCGCAGAA TGCCGCCGAT CCGGCCATCG GGCGCGAAGG CCCGACTTGG
CTGTATCGCG GCCGGCCGCT GCCGCATCTG TGGGAAGGCA ACCGCACCGC GACCTGGGCC
CCGTTCGACG AAGGCGAGCC GCCGCACCGG CACGAACGCG CGATCCGCAC GGCGCTGCGG
GATGCGCAGG CGGTCGAGCG CGCCCGCATC CGCGTCGAGC AGACGCGCGG GCCGGTGCTG
CTGCTGTCGG CCACCGACGA CGGTTCGTGG CCATCGAGCG ACTACGCACG CATGGCGGCT
GCCCGGCTGG CCGAGGCGCG CCACCCGTAC CCGGTCGTCC ACCACGACTT CGCCGGCGCC
GGCCACGCCA TCGTCTTCCC CTATGTGCCG ACCACGCAGC TGGTCCATGC ACACCCGGTC
TCTGGCCGCA TCAGCACCGG CGGCGGTGAA CCGCGCGCCA ATGCTCGGGC TGACCTGCAA
TCCTGGGCCG CCGTGCGCCG CTTCCTGGCC GAGGCGGTGG CTGCGCGCAG CCGCCCCGTT
TCCGCATCAC GGAGTCTCTC AACCATGGCA TCCACTCCCG TCAACGATGT CGTCGATCGG
GCCGCCGGCC TGGACGACGG CAGCGCCGCC CACACGCTGC GCCATGCGCG CGACAAGGTC
GCCGTCGCCA CGCAGGGCAG CCATGACGCC CTGTTCGACG CAGCCCTGCC CGGCCTGACG
CCGGGCGAAC GCCTGCTGGT CGCCCTGTAC GCCTGCCGCC TGACGCCCGC CCCCGAACTG
GGCGCGCACT ACCGTGCCCG GCTGGCCGAA ACGCCGGTCG ATGCGGCGGC CCTGCAGGCG
GTCGAGCAGG GCGATCCGGC CACGCTGGCC GACGCCCGCC TGCGCGCCAT CCTCGCCTTC
GCGCGCACGC TGATCGAACG CCCGATCGAC GGCGACCGCG ACGCGCTGCT GCGCCTGCCC
GCCGCCGGCC TGGCCACGCC CGACGTGGTG ACGCTGTCGC AGCTGATCGC CTTCCTGTCG
TACCAGACGC GGCTGGTGGC CGGCCTGCGC GCCCTGCGCG AGGCCAGCCA GGCCCATCCG
GCCCATCCGA CCGGCCAACC CGCCGCCTCC ACGGAGACCG CAGCATGA
|
|---|
| Protein sequence | MAASPAFALS VAPADDLIDV PRRIVVTGLV PGAQVDLAAR TLRGHAVPWC SRAAFIADAD
GTVDLSRDAP VCGDYTGVDP MGLVWSQRPE GGTSREVFAS AATEPLTTTL TATAHGTPAC
ARFVQRLAAP GLTRHDVRDD GLVGTLYLPD PHAHPGPRPA VMVLNGSGGG INEPRAALYA
SHGYAAFALA YFKAPGLSDY ISNTPLEYFE RGLAWLRRRV RPLHDFVAVS GQSRGGELAL
LLGATFPAAV SAVIGYVPGA VVHSAQNAAD PAIGREGPTW LYRGRPLPHL WEGNRTATWA
PFDEGEPPHR HERAIRTALR DAQAVERARI RVEQTRGPVL LLSATDDGSW PSSDYARMAA
ARLAEARHPY PVVHHDFAGA GHAIVFPYVP TTQLVHAHPV SGRISTGGGE PRANARADLQ
SWAAVRRFLA EAVAARSRPV SASRSLSTMA STPVNDVVDR AAGLDDGSAA HTLRHARDKV
AVATQGSHDA LFDAALPGLT PGERLLVALY ACRLTPAPEL GAHYRARLAE TPVDAAALQA
VEQGDPATLA DARLRAILAF ARTLIERPID GDRDALLRLP AAGLATPDVV TLSQLIAFLS
YQTRLVAGLR ALREASQAHP AHPTGQPAAS TETAA
|
|---|
| |