| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1811 |
|---|
| Symbol | |
|---|
| ID | 1220649 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | + |
|---|
| Start bp | 1972550 |
|---|
| End bp | 1978570 |
|---|
| Gene Length | 6021 bp |
|---|
| Protein Length | 2006 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 637238203 |
|---|
| Product | putative siderophore synthetase protein |
|---|
| Protein accession | NP_519932 |
|---|
| Protein GI | 17546530 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1020] Non-ribosomal peptide synthetase modules and related proteins
[COG3208] Predicted thioesterase involved in non-ribosomal peptide biosynthesis |
|---|
| TIGRFAM ID | [TIGR01733] amino acid adenylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.159804 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGGTT TGCATAGCGA TTCCATCCTG CCGGCCAAGC AGGTCAGCGC AGCGTGGTTG
CACGATCGCG GCGCCGGCAA GGGGATCGAT ATGCGGCCGG ACCGGGACGG GAACATGAGG
GAAGCGATGG CGTCGATGGA AGGCGATCAC CAGCACCGCA GGGCGGTGGA GCGCGCGGCC
GGCTTTGAGC GCGCGCTGCG GCAGATTCAA CTGGCGGCGC CACCGGCGGA GACCGCCTGG
CTGCAGGTCG GCTGGCACGA TACGGCGATG CTGCCCGTGC TGGCGCGGCG CTACGGCGCG
CACGGCCGCT ACTGCATCGA GGTGGATTCC AGCCTCCAGG CGAGCCGCCT GCGGCGCGAG
CATCCCGGCG TCGAGTGGCG GGTGCCTGCC GCGCGGCCAC GGCCCGACGG CCACCTCGCG
GAGCCCGGCG GGATGGGGAT GCCGCGCGAG CGCTACGACA TCGTGCTGGC CGACCTGCGC
GAACTGGCCG CACCCGCGCG CGGGCCGATG CTGCGGCGCC TGTCGTCGCT GCTGCATGAC
CACGGCAAGC TGGTGGTCTG CCAGGCGCAG GCCCAGCCGC AGACCACACC AGGGGCCCGC
CCGGAAGATG CGATCGTCGC GCGCGGTGAC CCGCGCGCGG ACGCCGCGCA CTGGGTCGTG
CTGGACCGAT CCGACGCGGA TGCCACTCCC GGCGCACCGT CCGCCCAGGC CGGCCCCGGC
GACGACACCT TCGCCCTGAC CGACATCCAG CACGCTTACT GGATCGGCCG CGGCCAGGCC
CTGGCGCTCG GCGGCGTGTC ATGCCACGTC TACTTCGAGT GGGTCTCGCC AGACCTGGAC
CTGCAACGCT TCGAGCAGGC CTGGAACCGG ATCGTGGCGC GGCACGGCAT GATGCGCGCC
GTGCTGACGC CGGATGGGCG GCAGCGCATC CTCGGCACCG TGCCGCACTA CGCCATCGAG
ACCGAAGACC TGCGCGCGCA GCCGCCCGAT CGCGTGGCGG CCAGGCTCGC GCAGAAGCGC
GCCGGCATGT GCGGGCAGGT GCTCGACGCC GAGCGCTGGC CGCTGTTCGA CCTGCGCGCC
ACGCGCGAGC CGGCCGGCGT GACCCGCCTG CACCTCGATC TCGACCTGCT GATGTTCGAC
GTGCAGAGCT TCCACATCCT GCTGGCCGAG CTCGAGCGCA GCTACCGCGA CCCGGCCGCG
CAGCTGCCCG CCATCGGCCT CAGTTTCCGG GACTACCTGC TGGCCGGCCG GGACGCCGCG
GGCGAAGCAG CCTATCTGGC CGACAAGGCC TGGTGGCAGG CCCGCCTGCC AGAGATCGCG
CCGCCCCCGC GGCTGCCGCT CGCGCGCGTG GCGTCCGACG TGGCGCGGCC GACATTCCGG
CGCCTGCAGC ATCGCTTCGA CCCACAGGCG TGGCAGCGGC TGTCGGCCTT TGCCGCCGAG
GCCGGGCTGA CCGGCTCGTC CGTGCTGCTC ACCGCGTTCT CGGAAGTGCT CGCGCGCTGG
GCCGGCGACG GCCGCTTCAC GCTCAACCTC ACGCACTTCA ACCGCCGCCG CGTGCATCCG
GATGTCGAGC GGCTGGTCGG CGATTTCACC TCGGTGCTGC TGCTCACGGT CGACTGCAAC
GCGCCGCTGG CCTTCGCCCA GCGTGCCGCC GCCACCCAGG CCCAGCTCTG GGCCAGCCTG
TCGCACACGC GCTTCGGCGG CGTGGAAGTC CTGCGCGAAC TGGCCCGCCA CCGCGCGCAG
GACGGCGGCG GCATGGACGG CGGCAGCCTG ATGCCGGTCG TGTTCACCAG CCTCCTGGGC
ATGGATCTCG ACCTGCTGGT CCGTGGCGCG GACCTGCTCG GCGAGCCGGA ATTCCTCTAC
ACCTGCACGC CCCAGGTCTG GCTCGACCAC CAGGTGATGG TCCGCAAGGG CACGCTGGAA
TTCAACTGGA TCGTGATCGA CGACCTGTTC CCGGAGGGCA TGGTCGATGC GATGTTCGAG
GCCTATTGCC GGCGGCTCGA CCATCTGGCC CAGGATGCCG CGCATTGGCA GCAGCCGATG
CCTGCTGAAC TGCCCGCAGC GCAGCGCGCG GTGCGCGAGG CCGTCAACCG GACCGCGCTA
CCGCTGCCGC AGTCGCCGCT GCACGCGGGC TTCTTCCGGC AGGCGGTGGC GCAGCCGCAC
GCGCTGGCCT GCGCCACCGC CCATGCCAGC GAGACCTATG CCGGACTGGC CGCCCGCGCG
CTGGCGCACG TGCGCACGTT GCGCGAGGCG GGCGTCATGC CCGGCGATCT CGTTGCCTGC
GCCATGCCCA AGGGCATTCC CGCGCTCGCC GCCGCCATCG GCATCGTCGC GGCGGGCGCG
GTGCTGGTGC CGTTGGCCAG CGACATGCCC CCGGCGCGCA TGCAAGCCAT TCTCGATGGC
GCAGGTGTCA AAGCCGCCTT TATCGCGCAG GCGGACTTCA CGCGGCCGGC ATGCGCCAGC
CCCGTCGCGT GGCTGGTGTC GCCGGAGTCC GAGCCGGCCG TGTACGCAAG CGCCGCGCTG
CAGCGGGAGA TCGACGCGCA CGTCGCGTCG CCCGCCCTCG ATGCGCTGGC CTACATCATC
TATACCTCGG GCTCGACCGG CACGCCCAAG GGCGTGGCGA TCACGCACGG CGCGGCCGGC
AACACGCTGG AAGCTGTCCA CGCGCTGCTG GGCCTGACGC CGGACGACCG CGTGTTCGGC
ATCTCGGCGC TGGGCTTCGA CCTGGCCATC TACGATGTCT TCGGCATGCT GTCGCGCGGC
GGCGCCGTGA TCCTCCCGGA CGAGGCGGGC ATGCGCGATG CTGCGCACTG GCTGGACCTG
GCGCACCGGT ACGGCGTCAC GGTCTGGAAC TCGGTGCCGG CCCTGCTGGC GATGCTGGTC
GAGCGCGCGG CATCCAGCGG TCGGGGCCTG CCGGCATCGT TGCGCTGGGT CATGCTCAGC
GGCGACTGGA TTGCGCTGGA CCTGCCGGCA CGCCTGCGCG CACTGGCGCC GCACACGCGC
CTGGCCGCCC TCGGCGGCGC CACCGAGGCC GCGATCTGGT CGAACTGGTT CGAGGTCGGG
CGGGTCGATC CCGCCTGGCG CTCCATACCG TACGGGTTTC CGCTGGCCAA CCAGTCCTAC
CGGGTGCTCG ATGCCCACCT GCGCGATTGC CCGGACTGGG TCGATGGCGA TTTGCATATC
GGCGGCGCCG GCCTGGCTTC GTGCTACTGG CGCGATCCGC AGCGCACCGC CGAGGCCTTC
ATCACCCACC CCGCCAGCGC AGAGCGCCTG TACCGCACCG GCGACCGCGC GCGCTACTGG
CCGGACGGCT GCATCGAATT CCTCGGGCGC GTCGACAGCC AGGTCAAGCT CGGCGGCCAC
CGCATCGAGC TGGGCGAGAT CGAAGCCGCG CTGACGCAGC ACGACGGCAT CCAGGCCGCG
GCCGCCACGG TCTGCGCCAC AGCGGGCGGG GGACAGCAGC TGGCCGCCTT CGTCGTGCCG
CGACACGCCC CGGCTTCTGC CGACGGTGCC GCGCACGATG CCGCCTGGCA GGCCCTGGCG
GCGGCCTGCG CGTCCGCGGC GGCGGCGCTG CCCGCGCCGG CCAAGGTGGC CTCGCTGCAA
GGCTTCCAGC AGGAGACGGA ACGGCTCGCG CCGATCCTGG TGCTGCGCAA TCTGCGGCAA
CTGGGCGTGG ACGTGCCGCA AGGCGCCGTG CTCGAGCGCG ATACCGAGAT GGCACGCCTG
CACATCGCCG CGCACTACCG GCGCCTGTTC GATGCCTGGC TGCGCATGCT TGCCGAACAG
GGGTGGCTGG CGGCCGAAGG CGAGGGGCGC TGGCGCGTGC TGCGCGCGTT CCCGGCGCTG
GCGCGGTGCG AACGCCTGAT CGCGGAAAGC CGGGCCATCG TCACCGCGCA GATGGACTGG
GTGCACGACT CGCAAGGCCT GACCGACTGG ATCTTCGACA GCGCCGCGCG CGTGCCGTCG
GTGCTGCGCG AAGCGGCCCA TGCCGCCGGG CTGGTGTTCC CCGAAGGCGA TCGGCGCGCG
GCGGAGAGTC TCTACCAGCG CAATATCGTC GCGGACTATC TTGGCGCGGT GGCGGGCGCG
GCCCTCGCGC CGCTGGCGCG CGAACGCAAG GCTGCGCTGC GGGTGCTGGA GGTCGGCGCC
GGCGTCGGGG GGCTGACAGC GCATACCTTG CCGGCCCTGC ACGCCGCCGA CCCCGACGCC
GAATATCACT ACACCGACGT CAGCCGGTTT TTCGACGACA TCGCCACCGC CAAATTCGGG
CACTACGGCA GCCTGCGGCT GGGCCGCTAC GACATCAACC GGGGCGCGGC CGAACAAGGC
CACGCCCCCG CCAGCTTCGA CGCGGTGCTG GCGGCCAACG TGTTGCACAA CGCGCGCGAC
GTGACCTGGA CCCTGCGCGA GCTGCGCGGC CTGCTGCGTC CGGGCGGCGT GCTGATCCTC
CACGAAGCCA CGCAGGACAA GCGCTTGCAA TGGGTGACCG CCGCCGCCGT GCTGGAAGCC
GCCGCGCACG CCGGCCGCAG CGCGCCCGGC GCCGGCCAGG CGGGCCGGGC GGATGATTCG
CCGCTGCTAT CCGCGCAGGC ATGGGAACAG GCGCTGCAGG CAAGCGGGTT CGATCGCAGC
CGCGCGTTTC CGGCACCCGA CAGCCCAATG GCATTCGTCG GCCAGCAGGT CTTTCTCGCC
TGGGCGCACA CGCCGTCCGG CACGGTCGAT CTGGCCGACG TGCGCCGGCA CCTGGCCGAA
CGGCTGCCGC GTTATATGGT CCCGGCCCAC CTGGCCTGCA TCGCGCAGTT GCCGCTGTCC
GCCAACGGCA AGGTCGATCG CAAGCGCTTG CCGTACCCGA TGCCGCACGA CGCGCCGGCA
GGCCAGCCGG GCGCGGCCGG TGAGCCGCCG GCGCCCGGCA TGGAAAGCAC GCTGGCGCGC
CACTGGGCCG ACACGCTGCA CCTCAGCCTG GACACCCTCG GCCGCGACAG CGATTTCTTC
CTGGCCGGCG GCGACAGCCT GCTCGTGACG CGGCTCGCTG CCCGCCTGGG CGATGCGCTG
GCGTGCGCGG TCCCCATCCG GATGCTGTTC CAGCACAGCC GTCTCGCAGC GCAGGCGGAG
GCCCTGGACA CCCTGCGCCG GCAGCCGGCG CAGGCCGGTG CCGGGTCACC CGTCTTCCCG
CTCGGTCCGC CCGCGGCGCG CACGCTGGTC TGCGTGCACG CCAGCGACGG ACATGCCGCC
GCGTACCGAC CGCTGGCGGC GGTGCTCGCG GGCACGGTGC AGTGTGTGGC CCTGCAATCG
CCAGGGCTCG AAGCGGGCCA GGCCCCGCTG CGCAGCGTGG AGGCCCAGGC CGCGTGCTAC
CTCGCGGCGC TGCGCGCGGG CCGCGAAGCC GGAGCGCAAG CGCCGTGGCA TGTGCTCGGG
TGGTCGATGG GCGCTTACGT AGCGGTCGAG ATGGCACGCC AACTGGCGCA AGCCGGCGAG
TGCGTGGCGC AGTTGCTGCT GGTCGATCCG GCACCGCAGG AGGCGATGCG CGCGGCCGCG
CGCAGCGAAT ACGACTTGTT GCTGTCGCTG GCGCCGGAGG CCGTCCGGCG GGAGCTGGCG
GAGCAGGTCG GCAGCGCCGA TGCCTTCGCA TCCCTGCCGC CGGCCCGGCG GCTCGCGCAC
TGGCGCGCCG GCCTGCGCCT GGCAGCGCCG TCGCCCGCTG ACGATGACGC CGCGCTGGAG
CGGATGGTGG CGGTGCTGCT GGCCAACGTG ACCGCGATGG TGGATTACCG CCTGCCGATC
CTGGACCTGC CGACCGTGGC GCTCTACCAG GCCAGCGAGC ATCCGGCCGG CTGGGGCGAC
GTCATCGCGC CATGGCGCGA CGTCTTCCCG CGCGGCATCC AGGCCGAGAC CCTGGCGGGA
ACCCACTGGT CCGTCGTCGG CGCAGAGGTG CTGGGGCCGG TTCTGGCACA GCGCCTGCGG
GAGGGCGGGG CGGCAGCACC AGCCACACCA GCCGCGCTGC CCCGCGAAGC GCGGCAACGG
CATCCGGACA GCGCCCCTTG A
|
|---|
| Protein sequence | MRGLHSDSIL PAKQVSAAWL HDRGAGKGID MRPDRDGNMR EAMASMEGDH QHRRAVERAA
GFERALRQIQ LAAPPAETAW LQVGWHDTAM LPVLARRYGA HGRYCIEVDS SLQASRLRRE
HPGVEWRVPA ARPRPDGHLA EPGGMGMPRE RYDIVLADLR ELAAPARGPM LRRLSSLLHD
HGKLVVCQAQ AQPQTTPGAR PEDAIVARGD PRADAAHWVV LDRSDADATP GAPSAQAGPG
DDTFALTDIQ HAYWIGRGQA LALGGVSCHV YFEWVSPDLD LQRFEQAWNR IVARHGMMRA
VLTPDGRQRI LGTVPHYAIE TEDLRAQPPD RVAARLAQKR AGMCGQVLDA ERWPLFDLRA
TREPAGVTRL HLDLDLLMFD VQSFHILLAE LERSYRDPAA QLPAIGLSFR DYLLAGRDAA
GEAAYLADKA WWQARLPEIA PPPRLPLARV ASDVARPTFR RLQHRFDPQA WQRLSAFAAE
AGLTGSSVLL TAFSEVLARW AGDGRFTLNL THFNRRRVHP DVERLVGDFT SVLLLTVDCN
APLAFAQRAA ATQAQLWASL SHTRFGGVEV LRELARHRAQ DGGGMDGGSL MPVVFTSLLG
MDLDLLVRGA DLLGEPEFLY TCTPQVWLDH QVMVRKGTLE FNWIVIDDLF PEGMVDAMFE
AYCRRLDHLA QDAAHWQQPM PAELPAAQRA VREAVNRTAL PLPQSPLHAG FFRQAVAQPH
ALACATAHAS ETYAGLAARA LAHVRTLREA GVMPGDLVAC AMPKGIPALA AAIGIVAAGA
VLVPLASDMP PARMQAILDG AGVKAAFIAQ ADFTRPACAS PVAWLVSPES EPAVYASAAL
QREIDAHVAS PALDALAYII YTSGSTGTPK GVAITHGAAG NTLEAVHALL GLTPDDRVFG
ISALGFDLAI YDVFGMLSRG GAVILPDEAG MRDAAHWLDL AHRYGVTVWN SVPALLAMLV
ERAASSGRGL PASLRWVMLS GDWIALDLPA RLRALAPHTR LAALGGATEA AIWSNWFEVG
RVDPAWRSIP YGFPLANQSY RVLDAHLRDC PDWVDGDLHI GGAGLASCYW RDPQRTAEAF
ITHPASAERL YRTGDRARYW PDGCIEFLGR VDSQVKLGGH RIELGEIEAA LTQHDGIQAA
AATVCATAGG GQQLAAFVVP RHAPASADGA AHDAAWQALA AACASAAAAL PAPAKVASLQ
GFQQETERLA PILVLRNLRQ LGVDVPQGAV LERDTEMARL HIAAHYRRLF DAWLRMLAEQ
GWLAAEGEGR WRVLRAFPAL ARCERLIAES RAIVTAQMDW VHDSQGLTDW IFDSAARVPS
VLREAAHAAG LVFPEGDRRA AESLYQRNIV ADYLGAVAGA ALAPLARERK AALRVLEVGA
GVGGLTAHTL PALHAADPDA EYHYTDVSRF FDDIATAKFG HYGSLRLGRY DINRGAAEQG
HAPASFDAVL AANVLHNARD VTWTLRELRG LLRPGGVLIL HEATQDKRLQ WVTAAAVLEA
AAHAGRSAPG AGQAGRADDS PLLSAQAWEQ ALQASGFDRS RAFPAPDSPM AFVGQQVFLA
WAHTPSGTVD LADVRRHLAE RLPRYMVPAH LACIAQLPLS ANGKVDRKRL PYPMPHDAPA
GQPGAAGEPP APGMESTLAR HWADTLHLSL DTLGRDSDFF LAGGDSLLVT RLAARLGDAL
ACAVPIRMLF QHSRLAAQAE ALDTLRRQPA QAGAGSPVFP LGPPAARTLV CVHASDGHAA
AYRPLAAVLA GTVQCVALQS PGLEAGQAPL RSVEAQAACY LAALRAGREA GAQAPWHVLG
WSMGAYVAVE MARQLAQAGE CVAQLLLVDP APQEAMRAAA RSEYDLLLSL APEAVRRELA
EQVGSADAFA SLPPARRLAH WRAGLRLAAP SPADDDAALE RMVAVLLANV TAMVDYRLPI
LDLPTVALYQ ASEHPAGWGD VIAPWRDVFP RGIQAETLAG THWSVVGAEV LGPVLAQRLR
EGGAAAPATP AALPREARQR HPDSAP
|
|---|
| |