| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1802 |
|---|
| Symbol | |
|---|
| ID | 1220640 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 1939404 |
|---|
| End bp | 1940078 |
|---|
| Gene Length | 675 bp |
|---|
| Protein Length | 224 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637238194 |
|---|
| Product | putative transcription regulator protein |
|---|
| Protein accession | NP_519923 |
|---|
| Protein GI | 17546521 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0437387 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCAAC CGCGTCCGCC GTTCCACATC ACGATCCCGA TCTATCCCGG CGTCGACCTG
CTGGATGTGG CGGCGCCGGT CGAGCTGTTC AGCTGGATGG CCGATGCCTG GAAAGCGCGG
GCGACGACGA TCACCCTGGC CGCGGAGCAC CTGACGCCGC TCAAGACCCG CGACGGCCTG
ACCCTCACGC CGCAGCGCCA GTTCGCCGAC TATGCCGACG CCGCCGCGCC GCAGCCGCAG
ACCCACCTGC TATGGGTGCC GGGCGGCGCC CCCGACGTGC TGCGGAAATT GATGCGAGGC
GGCCCATACC TGGATTTCCT GAAGGCGCAG AGCGCCGGCG CGGACCATGT CTCGTCCGTC
TGCGAGGGCG CCCTGCTGCT GGCCGCCGCG GGCCTGCTCG ACGGCTATCG GGCGACCACG
CACTGGGCGT TCATCCCCTG CCTCCAGCAG TTCCCCGCGA TCAAGGTGGC CGAAGGCTTC
CCGCGCTACG TCATCGACGG CAACCGCATC ACCGGCGGCG GCATTTCGTC GGGGCTGGAC
GAGGCGCTGG CGATCGTGGC CCGCGTGGCG GGACAGGACA TCGCCAAGCA CGTCCAGATG
ATCACGCAGT ATTTCCCGGA CCCGCCCTTC GAGCAGACCA TCGTCCCGGC CACGCACTGC
CCGCTGCAGG CGTGA
|
|---|
| Protein sequence | MAQPRPPFHI TIPIYPGVDL LDVAAPVELF SWMADAWKAR ATTITLAAEH LTPLKTRDGL
TLTPQRQFAD YADAAAPQPQ THLLWVPGGA PDVLRKLMRG GPYLDFLKAQ SAGADHVSSV
CEGALLLAAA GLLDGYRATT HWAFIPCLQQ FPAIKVAEGF PRYVIDGNRI TGGGISSGLD
EALAIVARVA GQDIAKHVQM ITQYFPDPPF EQTIVPATHC PLQA
|
|---|
| |