| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1690 |
|---|
| Symbol | |
|---|
| ID | 1220526 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | + |
|---|
| Start bp | 1806953 |
|---|
| End bp | 1809826 |
|---|
| Gene Length | 2874 bp |
|---|
| Protein Length | 957 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637238080 |
|---|
| Product | phage hk97 tail length tape measure-related protein |
|---|
| Protein accession | NP_519811 |
|---|
| Protein GI | 17546409 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5281] Phage-related minor tail protein |
|---|
| TIGRFAM ID | [TIGR01541] phage tail tape measure protein, lambda family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.260422 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.358408 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGAAG CGGTGGGCAA TGCGGTCGTC GGCAAGGCGA CGCTCATGGT CGATGCCGAC
GCTACGGGCG TCAAGGCGGG CATGGGGGCG GCCCGCGCCG AGGTTGTAGC GCTGGAGAGC
GTCACGGCCA CATCGGGCAA GAAGTCGGCG CGCAACATTC AGACGATCGG TGACGCGGCC
ACCAACGCCG CCGGCAACAT GGACGCGGCC GCCAGCCGCT TCCTCAAGAG TCTGGAACGG
CAGGCGGACC GCGCCGGCAA GACGGCGGCG GAATATGCCG CGCTGCGCGC CGAGCAGCTC
GGCGTGTCGC AGGCGGCCGC GCAGTACATC GAGCGCATGC GTGCTGCCGA GCTCGCCAAC
AAGGCCACCG ACACGTCGAC GCAAAACCTC GGCGTGTCCG CCCGTCAGAC CGCCGCCGCG
ATGCGGATGG TGGCGCCGCA GATGACGGAC ATCCTGACAC AGTTGGCGGG TGGCCAGAGC
CCGCTGCTGG TGCTCACGCA GCAGGGCGGC CAGCTCAAGG ACATGTTTGG CGGCATTGGG
CCAGCCCTCA AGGGCGTTGG CAGCTACGTT GCCAGCCTGA TTACGCCGAC GACGTTGGCA
GCCGGCGCGG CGGCGGCACT GGCTTTAGCC TGGTCGACAG GCGCGCAGGA GGCGCGCGGC
TACACAAACG CGCTCATCAT GACCGGCCAC TATGCCGGGG TGTCCAGCGC GCAGCTGGCC
GGGATGGCGG AGGGCGTGTC GCGCGTCATT GGTACGCAGT ACGCGGCGGC CGACGTGCTG
TCGCGGCTGA CGGCCACCGG CCGGGTGGCC AGCGAGCAAA TGGGCCAGGT TGCGGTTGCC
GCCATCGCCA TGGAGAAGGC GACCGGCCAA TCAATCGACG AGACCATCAA GGATTTCGTC
AAGCTGGCCG AGGAACCGAC CAAAGCCTCG GTCAAGCTCA ACGAGCAGTT CCACTACCTG
ACGGGCGCGG TCTACGAGCA GATCGCCGCG CTGGAGCGGG CCGGGCAGAC CGACGAGGCC
GCGGCGCTCG CACAGAAGAC GTACGCCGCC GCCCTGGCGG ACCGCGCGAT GGAGGTCCGC
CGCAACGTCG GGTACATGGA GCTCGCGTGG ATCGGCTTGA CCGATGTGGC TAAGAAGGCG
TGGGACGCGG TCGCCGGCGT CGGCCGCGCC GAGACGCCGG CCGACAAGCT CAACGGCCTG
TATCGCGCCA TGGCGCAGCA GGAGAAGGAG CTCGCTGAGG CGCGGGCCAA GGGCTACAAC
ACGGTCCAGC TCGAGGCCGC GCTCGGCGCC AATCGGGCCA AGCTGCAGCA GTACAACGAC
ACCGTGGTCG GCGACGCCAA GAAGGCGGCC GACCAGGCGG CCAAGCAGCG GGCCGAGGAT
GACCGGATCT CGGCGCGCTC CTCGATCGAC GCGCTGATGA AGAGCGTGCG GTCGCGTCAG
CAGATCCGCG ACGACGACCT GAAGAAATTC AAGGCGGACG CGGAAAAGGC GGGTCTCACG
GCGGAGGAAT ACGCCAAGGG CGTCGCCGCC ATCAACGAGA AGTACAAAGA CAAGTCGTCC
AAGGCCTACA CCGAGGATGC CGGCACGCGC ATGCTCGAGC AGCTGCGCAA GACCGGCGCG
GCGCTGGCCG CCCAGCAGAC CGTCGACGAG CAGCTGACGG CCGGCCAGAA GGCTCGGGCC
GAGTTTGAGC AGCAGATCGC CGACATCCAG ACCCGCAAGA CGCTCACGGC GGACCAGAAA
AGCCTGCTCG CGCACCAATC CGAAATCAGG GCGCAGCTGG ACCTGAATGT CGCCGCCGAG
CAGGCGATCC AGAAACGCAA AGACGAGACG GCCGAGCTCG AGAAGCAGCG CAAGCTGCTC
GAGGACGCGC GCCAGCAGGC CGAGGGCATG CGCGTGCGCA TCGCTGACGC TGCCCAGGCG
CGCAGCGAGC AGTTCGGCCG CCAGCTCGAC GCATTTGGCC TGGGCCAGCG CGCCAACGAG
GAGTTGGCTG CCGCGAAGTC GATCTACCGC GAATTCGGAT CGATGCGCAC CGACTGGAAC
AAGTCGATGA CGAAGCGCGG CCTGGCCGGA TCCGATCTGT ACAAGGAAGG GCTCGCGCAG
ATCAACGCCA GCGAGCAGGA GGCGCTGCAG CAGCTGGGTG CCTATTACGA CGCGCTGGCG
GCCAAGCAGG CGGACTGGAA ATACGGCGCG CTGTCGGCGC TGGCCGACTA TCGGGACGCC
GCGGCCAACG TCGCCGCGTC GGCGCAGCAG CTGTTCTCCA ACGCATTCCA GTCGATGGAG
GGCGCCGTCG CCAAGTTCGC GACGACCGGC AAGCTGGATT TCAAGAGCTT CGCGCTGAGC
GTGATCGAAG ACCTGGCGCG CATCCAAGCG CGGGCCGCAA TTTCCGGGCT GGCACAGATG
GGGATCAGCC TTGTTGGGAG CCTCTTCAGC GGCGCGATGA GCAGCGGCGC AGGGGCGTTC
TCCGGTGCGG CCACGGCGGC GGCCAGCAGC GGGACAGTGC CGGTTGCCGG CGACATGCTC
TATGGCAGCA GCATGCAGGC GCCGAGCTAC ACCAGCGGCG TGTTCCTGAG CGGCGCTCGC
GCGGGTGGCG GGCCCGTCGA TGCCGGTGGC CTGTATCTGG TCGGCGAGGA GGGGCCCGAG
CTGTTCAAGC CGAGCGGCTC GGGCTCGATC GTGCCGAATC ACGCCATCGG CGGTGGCGGC
GACGTGACCG TCAATGTCAT CGGCGCGCCG AGCCAGCCGG AGGTACGCCA GTCGACCGAC
GGCAACGGTA ACAGGCAGAT CGACCTGATT TTCAAGGAAA TGGATCGCCG CATCGATGAC
CGCATCCAGC GCGCCACCAT GCAGGGCGGC GTGCTGTCGC GGCGAGGGGG GTAA
|
|---|
| Protein sequence | MAEAVGNAVV GKATLMVDAD ATGVKAGMGA ARAEVVALES VTATSGKKSA RNIQTIGDAA
TNAAGNMDAA ASRFLKSLER QADRAGKTAA EYAALRAEQL GVSQAAAQYI ERMRAAELAN
KATDTSTQNL GVSARQTAAA MRMVAPQMTD ILTQLAGGQS PLLVLTQQGG QLKDMFGGIG
PALKGVGSYV ASLITPTTLA AGAAAALALA WSTGAQEARG YTNALIMTGH YAGVSSAQLA
GMAEGVSRVI GTQYAAADVL SRLTATGRVA SEQMGQVAVA AIAMEKATGQ SIDETIKDFV
KLAEEPTKAS VKLNEQFHYL TGAVYEQIAA LERAGQTDEA AALAQKTYAA ALADRAMEVR
RNVGYMELAW IGLTDVAKKA WDAVAGVGRA ETPADKLNGL YRAMAQQEKE LAEARAKGYN
TVQLEAALGA NRAKLQQYND TVVGDAKKAA DQAAKQRAED DRISARSSID ALMKSVRSRQ
QIRDDDLKKF KADAEKAGLT AEEYAKGVAA INEKYKDKSS KAYTEDAGTR MLEQLRKTGA
ALAAQQTVDE QLTAGQKARA EFEQQIADIQ TRKTLTADQK SLLAHQSEIR AQLDLNVAAE
QAIQKRKDET AELEKQRKLL EDARQQAEGM RVRIADAAQA RSEQFGRQLD AFGLGQRANE
ELAAAKSIYR EFGSMRTDWN KSMTKRGLAG SDLYKEGLAQ INASEQEALQ QLGAYYDALA
AKQADWKYGA LSALADYRDA AANVAASAQQ LFSNAFQSME GAVAKFATTG KLDFKSFALS
VIEDLARIQA RAAISGLAQM GISLVGSLFS GAMSSGAGAF SGAATAAASS GTVPVAGDML
YGSSMQAPSY TSGVFLSGAR AGGGPVDAGG LYLVGEEGPE LFKPSGSGSI VPNHAIGGGG
DVTVNVIGAP SQPEVRQSTD GNGNRQIDLI FKEMDRRIDD RIQRATMQGG VLSRRGG
|
|---|
| |