| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1645 |
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| Symbol | ahpD |
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| ID | 1220480 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | - |
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| Start bp | 1769251 |
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| End bp | 1769778 |
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| Gene Length | 528 bp |
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| Protein Length | 175 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637238034 |
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| Product | putative antioxidant protein |
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| Protein accession | NP_519766 |
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| Protein GI | 17546364 |
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| COG category | [S] Function unknown |
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| COG ID | [COG2128] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00777] alkylhydroperoxidase, AhpD family
[TIGR00778] alkylhydroperoxidase AhpD family core domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.27436 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGACTTCC TTCAAGCGAT CAAGGCGCGC ATTCCCGACT ACGCCAAGGA CATCCGCCTG
AACCTGGACG GCACCCTCGC GCGCTCGTCG CTGCAAGGCA GTGACGCCAT GGGCGTGGCG
CTGGCGGCGG CCTTCGCAGC CCGGAGCAAG GTGATCGCCG ATGCCATCCG CGATGCCGGC
GTGCTGTCGC CGGAGGAAGT CAACGGCGCT CTGAGCGCGG CCGCGCTGAT GGGCATGAAC
AACGTCTGGT ACCCCTACGT CGAGATGGCG GACGACGCCG ACCTCGCGCA GCAGCCGGCC
GAACTGCGCA TGAACGCCTA CGCCGGCAGC GGCGGCGTCG ACAAGCGCCG CTTCGAGATG
TATGCGCTGG CCGCGTCCAT CGTCGGCAAG TGCCATTTCT GCATCCAGTC GCACTACGCG
CAGCTGAAGC GCCACCAGGA CATGACGACG CAGCAGTTGC GCGATGTCGG CCGGATCGCG
GCGGTGATCC ACGCGGCGGC ACTGGTGATC GCGGCGGAAT CGGCGTAA
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| Protein sequence | MDFLQAIKAR IPDYAKDIRL NLDGTLARSS LQGSDAMGVA LAAAFAARSK VIADAIRDAG
VLSPEEVNGA LSAAALMGMN NVWYPYVEMA DDADLAQQPA ELRMNAYAGS GGVDKRRFEM
YALAASIVGK CHFCIQSHYA QLKRHQDMTT QQLRDVGRIA AVIHAAALVI AAESA
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