| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1571 |
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| Symbol | lpsJ |
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| ID | 1220402 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | + |
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| Start bp | 1686956 |
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| End bp | 1687594 |
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| Gene Length | 639 bp |
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| Protein Length | 212 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637237956 |
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| Product | succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B protein |
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| Protein accession | NP_519692 |
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| Protein GI | 17546290 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG2057] Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit |
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| TIGRFAM ID | [TIGR02428] 3-oxoacid CoA-transferase, B subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCATGGA CGCGTGATGA AATGGCTGCG CGCGCAGCCA GGGAGCTGCA GGACGGCTTC
TATGTGAACC TGGGCATCGG CCTGCCGACG CTGGTCGCCA ACCACGTGCC GGACGGCATG
GAGGTGTGGC TGCAGTCGGA GAACGGCCTG CTCGGCATCG GCCCGTTCCC GACCGACGAC
GAGGTCGATC CCGACATGAT CAACGCCGGC AAGCAGACCG TGACGACGCT GCCGGGCTCG
TCGATCTTCT CCTCGGCGGA TTCGTTCGCC ATGATCCGCG GCGGGCATAT CAACCTGGCC
ATCCTGGGCG CGATGCAGAT CAGCGAGACG GGCGACCTGG CCAACTGGAT GATCCCGGGC
AAGATGGTCA AGGGCATGGG CGGCGCGATG GACCTGGTCG CGGGCGTCAA GCGCGTGATC
GTGCTGATGG AGCACACCGC CAAGAAGAAG GACGGCTCCG AAGACCTGAA GATCCTGCCC
AAGTGCACGC TGCCGCTGAC GGGCGTGGGC GTGGTCGACC GCATCATCAC CGACCTGGGC
GTGATCGACG TGACCGAGCA TGGCCTGAAG CTGGTGGAGG CCGCGCCGGG TGTCTCGCGC
GAGGACATCC AGTCGAAGAC GGGCGTCAAC CTGCTGTAA
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| Protein sequence | MAWTRDEMAA RAARELQDGF YVNLGIGLPT LVANHVPDGM EVWLQSENGL LGIGPFPTDD
EVDPDMINAG KQTVTTLPGS SIFSSADSFA MIRGGHINLA ILGAMQISET GDLANWMIPG
KMVKGMGGAM DLVAGVKRVI VLMEHTAKKK DGSEDLKILP KCTLPLTGVG VVDRIITDLG
VIDVTEHGLK LVEAAPGVSR EDIQSKTGVN LL
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