| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1546 |
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| Symbol | |
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| ID | 1220376 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | + |
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| Start bp | 1655952 |
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| End bp | 1660007 |
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| Gene Length | 4056 bp |
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| Protein Length | 1351 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637237930 |
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| Product | hypothetical protein |
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| Protein accession | NP_519667 |
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| Protein GI | 17546265 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1882] Pyruvate-formate lyase |
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| TIGRFAM ID | [TIGR01413] Dyp-type peroxidase family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.369989 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGAGT CAGGCAACAG CATGCGTTGG AGCCGTCTTG TCGTGGATTT TTTCCTCGAC
CCGCACGGCC ACGCGCCAGT TGGCGCATCG CCGGATACCG CCCAGGCGGA GAGCCCGGAG
CCATTGCTGC GTGATCGTGC CAACGCTACC CTGAGCTGGA TGCAGCCGGG TCTGATCTAT
CCCGCCCCTT TTCAGAATGC GTTGTCGATC TTGCGCCTGC CGCCTTCCCT GGACCGCGCA
CGGTTCGGCA AATTGCTGTC GGCCGCTCGT CGCTACATCC ACACCGACCA TCCCGACGTC
CATGCCAGCG CTTGCGTAGC GTTTGCCTTC TCGACCTGGA CGCAATTCTG CAAGGCCGAA
TCGCGTACGC CGCCGCGCGG CATGGTGTTC GAGCAGCCCG GCGCCGGCCC GGATGCGCCG
CAAGTGGTCG ACCGGTCGCG CGGCGCGCTG CAGAGCAGCG GCGTGCAGGC CTGGTTCGTC
ATCAAGGCCG ATACGCAGGA CGCCGTGTCC GCGATCGCGC GTTTTCTCAC GGAGCGCTTG
GGTGAGGCGG GCGTCGCGGC GGACGCTATC GTCGAGGTCG CCATGCAGTC GCGTGTCAAC
CCGACGCTGC CGAAGGGCGG GGCGGGCGGG CGCGTGCTGG GGGGGCGGTT CCAGGAGAAC
CTGCGCAATC CCGCTTCGCC CGTGGAAGTG CTCGAGCATG TGCTGGTGGG CGACGAAGAC
CCTGGCAGCA TCGGCGGCGC TTTTGTCTTT ACCCAGCGTT TCCAGATCAA CTGGGCGGAA
ATCCACTCCA AGGCGGCCGC CGAGATCGAT TCGGTGATTG GCCGTCACCA GTACAGCGAC
GAGCTGGTCC CCTCGTACGA TGCCCGTTCT CACGTTCGCA GTTCCCACAC GTACGATGCC
ACGGGCAACA CCATCAAACT GCTGCGCTTG GGTTTGCCCT TCGGCCAGCG CAAGCGCAAC
GACGCAGGCA CGCCCCTGGT CGAGAACGCG GGCGGGGCTT CGCACAACGA CGAGGCGGGC
ATCTATTTCA TCGGTGTCGC GCGCTCGGCG GCACGGATCG AATCCGTTCT GCGCTCGCAA
TTCGGCGAAG CGGATGGCGA TGGCTTCGCG CGCGATCGCC TGCTTGGCGG CACGCACGTC
CGCTCGGACC TGGGCGGCTT CTTCTATGCG CCCAGCTTGC GCGAGTTGCA GGCCGAGGCC
TTCGCCGACG ACCTCAGCAG CCGGGTGCCC AACCGCTTCG AGGATTGGCG GCGGTTCCCC
GGAGTGGATT GGTCGCGGCT CAACCGCCAT TACGAAAAGC GCTCGCCCAA CGGCTGGATG
TTCTACAACC ACAAGGACTA TCTCTACACG ATCGGCACCC GCGCGGCCAG CGACAATGGA
CCCGCCCCGC TGTCCCTGCG TGTTCAGTTT CTTCTCGAAC GCTTGTTCAG CAAGTGGGAC
GATACGTGGT ATCGCGCTCA GAAGCCGGCC GAACTGGCGC CGCTTCGTCA GCAGCTGGAG
CATTTCTTCG CCGATCCGAG CCATGCCACG GAGCGGGATG CGCTGCTGGC CGAAGCGGGG
GGCGACGTCA AGGGGCCGAC GCCCCAGGCG CGCGCCGCCG ATCATGTCAT GCGTCAACCC
GTCGCCCTGC GCGCCGCCTG GGCGGCCCGG CTGCTGTGCA ACCTGGCGGC CCGGCTCGAC
GGCGTCGGCC GCCGTGGCAA CGGCGGGATG GATACCTGCG ACATTCACCC GCTCGATCTC
CTCGCCGGGT CGATGCCGGC GCAATCGCTG GCCGAGGGCC GCTACGTCAT CGACTACACA
CGGGACGATG ACGATGAGGC CGAGCGGTTT CGCTGGTTCA ACCTGTCGCT CAGCCCCACC
TCGGGCGTGG GCCACGTCGT CCCTGGCTAC GAAGCCCTGC TGACACACGG AATCCGTGGG
GTCAGCCGCC AGATCGACGA GGCTCAGCAG GCGCTTGCCG CCACCGATCC CCAGCGCGCG
GAAGCGGTCG CGCCCTTCTA TGCGGGGTCC CGTCTTGCGC TGCGCGGGCT TGCCGAATAT
CTCGAGGGGC TGGCCGGCAC CGCGCACGAC ACTGCGCAGG CCTTGCCGCA GGACCAGAAG
ATCGAACGCA CGAATCTGGC GGAGATGGAG GCGCGGCTGC GGCGGCTGGC CAGCGGCGCG
GTGCCCGAGA CGGTGCTCGA CGCGCTCCAG CTGGTGCTGG CTTGCCATGC GACGCTGCAC
CTGTGCGGAG AACCGGTCGC GGTGGGGCGG CTTGACCGGC TGATTCGACC GTTCCAGGAA
AAAGCGCCGC TCGGCGAGAC GCAGTTGCAG GAAGCCATCG ACTGCTTCTG GCTGAAGCTC
GGTGAGAAAA CCTTGCTCAA CCGGATTTTC ATCGACGACC GCCAGGAACT GGGCAATCTC
GCGATGGGCA ATCGCGCGGG CCCGTACCCC AAGGGGCAGA GCGTCAACCA GTGGATCCAG
CAGGTCACGG TCGGTGGTCT GAACGCCGAT GGCAGCTGGG AATATTCCGA TGTCACGCTG
GCCTGCCTGC GCGCGTCGTC CCGCTTGCCG TTCAACGCGC CGGTCCTGTC GCTGCGGGTT
TCGAGGGACA TGCCCTCCGC ATGGCGCAAG CGCCTGCTGG CCGAGGCCGC GCGCGGGCAG
CTCAGCGGCG GCGCCAGCCC GATCCTGCTC AATGACGACA AGATCATTCC GGCGCTCAGC
AGCTCGGGTA TCGCGATCGG GCCACGCGCC AGCGCCGACG AAGCCGCGCG GTGGAACGCG
GCCGTCCGCC GGGAAGACGC CCATGACTAC GCTTGCGATG GCTGCTACGA GCCGCAGTTT
GTCGGCGCCA ACTGGTTCCA TCTCGGTGGC GTCACCCTCT TGCAGATGCT GGAGGTTGCG
CTGAACCAGG GCCGGCAGAT GCAATCGGCC GGCCCCGTCG ATCTGTTCGG CAAGAACGTT
TCGTTCCGGT CTCAGCCAGC CAGCGCGATC GCTTCCTACG CCGAGCTGGA AGAGGTGTTC
TTCAAGCACC TGGAGTGGAC GTTCGCACGC CAGATGGAAG GAACGGTGGC GGATTTCGGA
CGCATGGAGG GCGTCTGTCC GTCGCCGTTG CTCAACCTGT TCATCCACGA CTGCTTGGCC
AAGGGGCGCG ACATCTATGC CGGCGGCGCG CGCTACAACG TGTTCGGGCC GTGCTTCACG
TCGCTGGCCA ACACGATCAA CGCGTTGTGG GCAATTCGCG TGATGTGCTT CGATCAGGCG
ACCGCGATCA CGACATTGAG CGAACTGGTC CAGGCGCTCC TCTGCAACTG GGGCGAGAAC
ATGATCGACC CACTGGTTCA TCCGACCGTG CTGGCCGGGG ATGCCACGCG CGTCAGTCAG
GCCGCGACCC GGTTCCGTCA ACTGCGATCC ATCGCACTGT CGCTGCCCCG GTGGGGACGC
GGCAACGCGG ACATCGACCG GTTCGGCAAC GAGATCTGCC AACGCGTCGC AGGGATCGCG
GTGCAGGTCA TGGCCCAGCC TCGCGATGGG CTGGCCGACC AGTACCGGCG CAAGGCAATG
GCCTACGGCA CGCCGGCGCA TCCTTTCGGC GGCTTCTGCA TGCAGCCGGG CGTGGGGACG
TTCGCGAGCT ATGTGGAGCA GGGGTTGGGC TGCGCCGCAT CGGCCGACGG GCGGCTTTCC
GGCCAGCCGT TGGGCACCGA CATGTCGCCA TCTCCTTCGC CTCTCGATCT GCCGGCAACC
GACGCCAGCC AGCAGCGCGT TGACGGCGTG CTCGCGCTCA AGGGCATCAC GGCGACGGAT
GCTTTCGGCT TTGCCAATGG GGCTCCGGTC GATCTCAATA TCGACGAAAG CATTGGCGAA
AGCCGGCTGG TCGAGATTCT GGACGCCTTT GTCGAAGGGG CGGGGTCGAA CATCCTGACG
GTGACCACGG CGGATCAGGC CACCTTCCTG GCCGCGGCCA ACTCGCCCGA GAGCTTCGAT
CTGCTGCGCG TACGGATGGG CGGCTGGACC GAGATGTTCG TGGCGATGCA CGCCACCCAT
CAGAAGGTGC ATCCGCGCCG GCCCTACAGC ACATAA
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| Protein sequence | MAESGNSMRW SRLVVDFFLD PHGHAPVGAS PDTAQAESPE PLLRDRANAT LSWMQPGLIY
PAPFQNALSI LRLPPSLDRA RFGKLLSAAR RYIHTDHPDV HASACVAFAF STWTQFCKAE
SRTPPRGMVF EQPGAGPDAP QVVDRSRGAL QSSGVQAWFV IKADTQDAVS AIARFLTERL
GEAGVAADAI VEVAMQSRVN PTLPKGGAGG RVLGGRFQEN LRNPASPVEV LEHVLVGDED
PGSIGGAFVF TQRFQINWAE IHSKAAAEID SVIGRHQYSD ELVPSYDARS HVRSSHTYDA
TGNTIKLLRL GLPFGQRKRN DAGTPLVENA GGASHNDEAG IYFIGVARSA ARIESVLRSQ
FGEADGDGFA RDRLLGGTHV RSDLGGFFYA PSLRELQAEA FADDLSSRVP NRFEDWRRFP
GVDWSRLNRH YEKRSPNGWM FYNHKDYLYT IGTRAASDNG PAPLSLRVQF LLERLFSKWD
DTWYRAQKPA ELAPLRQQLE HFFADPSHAT ERDALLAEAG GDVKGPTPQA RAADHVMRQP
VALRAAWAAR LLCNLAARLD GVGRRGNGGM DTCDIHPLDL LAGSMPAQSL AEGRYVIDYT
RDDDDEAERF RWFNLSLSPT SGVGHVVPGY EALLTHGIRG VSRQIDEAQQ ALAATDPQRA
EAVAPFYAGS RLALRGLAEY LEGLAGTAHD TAQALPQDQK IERTNLAEME ARLRRLASGA
VPETVLDALQ LVLACHATLH LCGEPVAVGR LDRLIRPFQE KAPLGETQLQ EAIDCFWLKL
GEKTLLNRIF IDDRQELGNL AMGNRAGPYP KGQSVNQWIQ QVTVGGLNAD GSWEYSDVTL
ACLRASSRLP FNAPVLSLRV SRDMPSAWRK RLLAEAARGQ LSGGASPILL NDDKIIPALS
SSGIAIGPRA SADEAARWNA AVRREDAHDY ACDGCYEPQF VGANWFHLGG VTLLQMLEVA
LNQGRQMQSA GPVDLFGKNV SFRSQPASAI ASYAELEEVF FKHLEWTFAR QMEGTVADFG
RMEGVCPSPL LNLFIHDCLA KGRDIYAGGA RYNVFGPCFT SLANTINALW AIRVMCFDQA
TAITTLSELV QALLCNWGEN MIDPLVHPTV LAGDATRVSQ AATRFRQLRS IALSLPRWGR
GNADIDRFGN EICQRVAGIA VQVMAQPRDG LADQYRRKAM AYGTPAHPFG GFCMQPGVGT
FASYVEQGLG CAASADGRLS GQPLGTDMSP SPSPLDLPAT DASQQRVDGV LALKGITATD
AFGFANGAPV DLNIDESIGE SRLVEILDAF VEGAGSNILT VTTADQATFL AAANSPESFD
LLRVRMGGWT EMFVAMHATH QKVHPRRPYS T
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