Gene RSc1399 details

Gene Information

• Locus tag: RSc1399
• Symbol: def
• ID: 1220223
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Ralstonia solanacearum GMI1000
• Kingdom: Bacteria
• Replicon accession: NC_003295
• Strand: +
• Start bp: 1496092
• End bp: 1496625
• Gene Length: 534 bp
• Protein Length: 177 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 637237777
• Product: peptide deformylase
• Protein accession: NP_519520
• Protein GI: 17546118
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0242] N-formylmethionyl-tRNA deformylase
• TIGRFAM ID: [TIGR00079] peptide deformylase

Plasmid Coverage information

• Num covering plasmid clones: 25
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 29
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGATCCGAC CGATCCTGAA GATGGGCGAC AGCCGCCTGC TGCGCGTGGC CAAGCCGGTC 
CAGCGCTTCC AGACGCCGGA GCTGACCGCG CTGATCGAAG ACATGTTCGA CACCATGGAC 
GCCGCGCGCG GCGCCGGCCT GGCGGCACCG CAGATCGGCG TCGACCTGCA GGTGGTCATC 
TTCGGCTTCG ACCGCAACGA TCGCTATCCG GATGCGCCCG CCGTGCCCAA GACGGTGCTG 
ATCAATCCGA CCATCGAGCC GCTGTCCGAC GCGATGGAAG ATGGCTGGGA GGGCTGCCTG 
TCGGTGCCCG GCCTGCGCGG CGTGGTGCCG CGCTACACGC GCCTGCGCTA TACCGGCTAC 
GACCAGCACG GCCACGCCAT CGACCGCATC GCCGAGGGCT TCCATGCCCG CGTGGTGCAG 
CACGAGTGCG ATCACCTGCA GGGCATCCTG TACCCGATGC GCGTGCAGGA TTTCACCCGC 
TTCGGCTTCA CCGAGATCCT CTTCCCCGAA TTGCCCGCCC ACCACAACGA CTGA 

 

Protein sequence

MIRPILKMGD SRLLRVAKPV QRFQTPELTA LIEDMFDTMD AARGAGLAAP QIGVDLQVVI 
FGFDRNDRYP DAPAVPKTVL INPTIEPLSD AMEDGWEGCL SVPGLRGVVP RYTRLRYTGY 
DQHGHAIDRI AEGFHARVVQ HECDHLQGIL YPMRVQDFTR FGFTEILFPE LPAHHND