| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc1294 |
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| Symbol | |
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| ID | 1220117 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | - |
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| Start bp | 1379195 |
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| End bp | 1380664 |
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| Gene Length | 1470 bp |
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| Protein Length | 489 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 637237671 |
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| Product | putative outer membrane CHANEL lipoprotein |
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| Protein accession | NP_519415 |
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| Protein GI | 17546013 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.567151 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCGCTGA GCGCCATCGC CCTGGCTGCG CTGGCCGGCT GCGCCGACTT CGGCAACGCG
CACAGCACGC AGACGCTCAC CGCGCCCGGG CAACTGGCCA GCGACAGGAC GCTGCCGTCG
CAGGGCGGCC AGTGGCCGTC GCAGAACTGG GTGGACCAGT TCAACGACCC GCAACTGCGA
GCGCTCGTCG ACGAGGCCAT CCACGACAGC CCGAACCTGC AGGTCGCCTT CGCCCGCGTG
CGAGCCTCCC GCGCCATGGC CGACGCGGCG CGCGGCGACC TGTATCCGAG CGTCGGGCTG
GATGCGGAGA TGACGCGCCA GCGCTTCTCT TCGTATGACC TGTTCGAAGG CACGCCGCTG
GGCGGCAACT GGGTCACCGA GTCGAAGATC CAGCTCGGCG TGAGCTACGA CCTCGACTTC
TGGGGCAAGA ACCGCGCCGC GCTGGAATCC GCGCTGTCGG ACGACAAGGC CATGGAGGCC
GAGAGCCAGG CCTCCCGGCT GATGCTGTCG ACCTCGGTGG CACGCACCTA TGTCAAGCTG
GCCGCGCTCT ACGCCCAGCG CGACGTAGCC GAGCGGACCA TCGCGCAGCG CCGCGAGCTG
GTGTCGCTGT CGGGCCAGCG CCTGCGCGCC GGGCTGGATA CGCAGGTCGA GACCACGCAG
GCGCGCGCCA ACATCGCCGC CGCGCAGACC GAACTGGAGC AGGTGGACGA GCAGATCGCC
CTGGCCCGCA ACCAGCTCGC CGCGCTGCTG GGCAAGGGGC CGGACCGCGG CCTTGCCATC
GCCCGGCCGA CCCTGCTGGC ACAGCCCACG CCCAAGCTGC CGGACCACCT GAGCATCGAC
CTGATCGGCC GCCGCCCGGA CCTGGTGGCC GCGCGCTGGC GCGTCGAGGC CACCGCCAAG
GACATCGACG TGGCCAAGGC CCAGTTCCTG CCCGACATCA GCCTGACCGC GTTCCTGGGC
CTGGCCTCCA TCGCGCCCGA GAACCTGCTG CTGGGCAACG CGCGCCAGCT GGGCATCGGC
CCGGCGCTGC GCCTGCCGAT CTTCGAGGGC GGCAAGCTGC GCGCCAACCT GCGTGGCAAG
TACGCCGGCT ACGACGCCGC CGTGGCCAGC TACAACCAGA CGCTGACCGA AGCCCTGCAC
GACACCGCCG ACCAGATCAC CTCGCTGCAC AGCATCGACA CCCAGATCGA CATCCAGCGG
ACCGCGCTGG CCGAAGCCGA GCGCGCCTAC AGCCTGGCCC GCACACGCTA CGGCGCCGGC
CTCGGCACCC AGCTGACAGT CCTGAATGCC GAGAGCACCG TGCTGCAGCA GCGCAGGCTG
GCCGCCCTGC TGCAGGCGCG CCGCCTGGAT GCCCAGATGG CCCTGATCAA GGCGCTCGGC
GGCGGCTACA CCGCCGAAGC CCTGCCCGGC GCCGCGCCCG ACACCCGCAC GACCGGCGAC
GCCGCCCAGA TCGCGCCGTC GCACAGCTGA
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| Protein sequence | MALSAIALAA LAGCADFGNA HSTQTLTAPG QLASDRTLPS QGGQWPSQNW VDQFNDPQLR
ALVDEAIHDS PNLQVAFARV RASRAMADAA RGDLYPSVGL DAEMTRQRFS SYDLFEGTPL
GGNWVTESKI QLGVSYDLDF WGKNRAALES ALSDDKAMEA ESQASRLMLS TSVARTYVKL
AALYAQRDVA ERTIAQRREL VSLSGQRLRA GLDTQVETTQ ARANIAAAQT ELEQVDEQIA
LARNQLAALL GKGPDRGLAI ARPTLLAQPT PKLPDHLSID LIGRRPDLVA ARWRVEATAK
DIDVAKAQFL PDISLTAFLG LASIAPENLL LGNARQLGIG PALRLPIFEG GKLRANLRGK
YAGYDAAVAS YNQTLTEALH DTADQITSLH SIDTQIDIQR TALAEAERAY SLARTRYGAG
LGTQLTVLNA ESTVLQQRRL AALLQARRLD AQMALIKALG GGYTAEALPG AAPDTRTTGD
AAQIAPSHS
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