| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc0550 |
|---|
| Symbol | |
|---|
| ID | 1219355 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 595202 |
|---|
| End bp | 595900 |
|---|
| Gene Length | 699 bp |
|---|
| Protein Length | 232 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637236909 |
|---|
| Product | response regulator transcription regulator protein |
|---|
| Protein accession | NP_518671 |
|---|
| Protein GI | 17545269 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.837595 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCATCC TGATTGCTGA AGACGACGCC ACCCTGGCCG ACGGGCTGAC CCGTTCGTTG
CGCCAGGCCG GCTATGCCGT CGACCGGGCC GCGGACGGCG CCGCCGCCGA CGCGGCCCTT
TCCGCGCAGA CCGCGCAAAC CTACGACCTG CTGATCCTCG ATGTCGGGCT GCCGCGCCTG
TCCGGCCTGG AAGTGCTCAA GCGGCTGCGC TCGCGCGGGG CGATGCTGCC GGTGCTGATC
CTGACCGCCG CCGACAGCGT CGACGAGCGC GTCAAGGGCC TGGACCTGGG GGCCGACGAC
TACATGGCCA AGCCCTTTGC GCTGTCCGAG CTGGAGGCGC GCGTGCGGGC GCTGGTGCGG
CGCGGCACTG GCGGCGGCGC CACGCTGGTC CGCCACGGGC CGCTGGCCTT CGACCAGGTC
GGACGCATCG CCTACATCCG CGACCAGATG GTGGACCTGT CGGCGCGGGA GCTCGGGCTG
CTGGAGATCC TGCTGTCGCG CGCCGGCCGG CTGGTCTCGA AGGAACAGCT GGTCGACCAC
CTGTGCGGCT GGGGCGAAGA AGTCAGCAAC AACGCGATCG AGGTCTACGT GCACCGCCTG
CGCAAGAAGA TCGAGGTGGA CGGCATCCGC ATCGCCACCG TGCGCGGGCT CGGCTATTGC
CTGGAACGCG TGAGCGTACC GGCTGCCGTC CATGGGTGA
|
|---|
| Protein sequence | MRILIAEDDA TLADGLTRSL RQAGYAVDRA ADGAAADAAL SAQTAQTYDL LILDVGLPRL
SGLEVLKRLR SRGAMLPVLI LTAADSVDER VKGLDLGADD YMAKPFALSE LEARVRALVR
RGTGGGATLV RHGPLAFDQV GRIAYIRDQM VDLSARELGL LEILLSRAGR LVSKEQLVDH
LCGWGEEVSN NAIEVYVHRL RKKIEVDGIR IATVRGLGYC LERVSVPAAV HG
|
|---|
| |