| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc0400 |
|---|
| Symbol | |
|---|
| ID | 1219204 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | + |
|---|
| Start bp | 427805 |
|---|
| End bp | 429793 |
|---|
| Gene Length | 1989 bp |
|---|
| Protein Length | 662 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637236758 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_518521 |
|---|
| Protein GI | 17545119 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0699] Predicted GTPases (dynamin-related) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0733804 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGACG CGCGTGATCG GGGCGCGCAT CCATACGATA GAACGATGAA CAACACACTG
AGCACTCAGT TCGAGCAATA CAGCGCCTGG CGCGCGTCGG TATTGCAATC CGTGGGGGAA
TTTCAGGACT GGCTCCAGGC CCAGGAACTG TACGACGCCC AAGCCGACAT GCGCGCCCAG
CGCATCCGCG GCGTACTGCG CAGCGATAAG CTGAAGGTCG CCTTCATCGC CGAGTTTTCG
CGCGGCAAGA GCGAACTGAT CAACTCGATC TTCTTCGCAG ACTTCGGCCG GCGCATCCTG
CCGTCGTCGG CGGGCCGGAC CACGATGTGT CCGACCGAGC TGATGTACGA CGACAGCTAT
CCGCCGTCGA TTCGCCTGCT GCCGATCGAG ACGCGCCTGC ACGATGCCTC CACCGCCGAT
TTCCGCGACG CCGGAAGCCA CTGGCTGTCG GTGCCGCTCG ATCCGTCGTC GCCCGAGGGC
ATGCTGGAAG CGTTCCGCCA CGTGGTGGAG ACCGTGCGTG TGCCCAAGGA GGAGGCCGAA
TTGCTGGGCC TCTACAACGA TGCCGATCCG GATGCCGCTT TCTCGGTGGA TGCCGCCGGC
ACCGTCGAAG TCTCGAAGTG GCGCCACGCC ATCATCAATT TCCCGCACCC GATGCTCAAG
CAGGGCCTGG TGATCCTGGA CACGCCGGGC CTGAACGCCA TCGGTACCGA GCCGGAGCTG
ACGCTGCGCC TGATTCCGGA TGCGCACGTG GTCGTGTTCG TGCTGGCCGC CGATGCCGGC
GTGACCAAGA GCGACCTGGA GCTGTGGCGC TCGCACGTGG GCGGCGGCCA GCGCAAGGGC
TGCATCGCCG TGCTCAACAA GGTCGACGGC CTGTGGGACC CGCTCAAGAG CGAGCGGGAA
GTCGAGTCCG AGATCAACCG CCAGATCGTG ACCACCGCGC AGGTGCTGGA TATCGACGTC
AAGCGCGTCT ATCCGGTCTC GGCGCAGAAG GGCCTGCTGG CCAAGGTCAG CCATGACCCG
GCGCTGCTGG CCAAGAGCCG GCTGCTGGAG CTGGAGTCGG TGCTGTCCGA CCAGCTGATC
CCGCAGCGGC GCGAGATCGT CACCGAGCAA GTGCAACTGG CCGTCAAGGA CATGGCTGCC
GGTGCGCAGC AACTGCTGCA GACGCGCCGC CGCGACATCG TCGAGCAGCT GTTCGAGCTG
CGCGGCCTGC GTGGCAAGAA CCACACGATG GTCAAGCACA TGCTGTCGCG CGTGCAGGGC
GAGAAGGAAG AGTTCGAGCA GAGCATCGCC AAGTTCCAGG CGCTGCGCAC GGTGTTCGGT
CGCCACAGCG CGGAGATCAT CAAGAGCGTG CAGCTCAAGC AGATCCGCAC CACCATGCGC
GACGCGCGCG AAAAGATGAA GGAGCGCGTG TTCTCGCGCG GCCTGCGCGA CGACATGGAG
AAGCTGTTCG GCCACCTGGG TGGCCTGGTG CGCGATGCCA CCAGCCGCAT CGACCAGTTG
CACCAGATGG TCGACGGCAT GTACAAGAAG TTCAATGCCG AGCACGGTTT CACGCTGTCG
CCGCCGCTGC GCTTCCTGGG CACGCGCTAT GACGCCGATC TCAAGGAGAC GCTGGCGCTG
GCGCACGCGC ACTTCGGCGC GTTCAGCTTC CTGACCCGTC CGAAGCCGCA GCTCGTGCAC
GGCGCGTTCT CGACGGTGGC CAGCCGCGTG CTGGACACCT TCCAGGACAT GAACCGCGAC
ATCGAGATCT GGCTGAAGTC GGTGATGTCG CCGCTCGAAG CTCAGGTGCG CGATCACCAG
AAGCAGCTGC GCAAGCGTGT CGATTCGATC GAGCGCATCC ACGAGGCGAC CGACACGCTG
GAGGCGCGCA TCGCCGAACT GGAGGCCATG CTCAACACGC TGGACGAGCG CAGCGGCACG
ATCGCCGACT ACTCGTCGCG CATCCTGTCG GCCGGCACGC TGCTGGAGAC CCAGTCGGTG
GCCGCCTGA
|
|---|
| Protein sequence | MPDARDRGAH PYDRTMNNTL STQFEQYSAW RASVLQSVGE FQDWLQAQEL YDAQADMRAQ
RIRGVLRSDK LKVAFIAEFS RGKSELINSI FFADFGRRIL PSSAGRTTMC PTELMYDDSY
PPSIRLLPIE TRLHDASTAD FRDAGSHWLS VPLDPSSPEG MLEAFRHVVE TVRVPKEEAE
LLGLYNDADP DAAFSVDAAG TVEVSKWRHA IINFPHPMLK QGLVILDTPG LNAIGTEPEL
TLRLIPDAHV VVFVLAADAG VTKSDLELWR SHVGGGQRKG CIAVLNKVDG LWDPLKSERE
VESEINRQIV TTAQVLDIDV KRVYPVSAQK GLLAKVSHDP ALLAKSRLLE LESVLSDQLI
PQRREIVTEQ VQLAVKDMAA GAQQLLQTRR RDIVEQLFEL RGLRGKNHTM VKHMLSRVQG
EKEEFEQSIA KFQALRTVFG RHSAEIIKSV QLKQIRTTMR DAREKMKERV FSRGLRDDME
KLFGHLGGLV RDATSRIDQL HQMVDGMYKK FNAEHGFTLS PPLRFLGTRY DADLKETLAL
AHAHFGAFSF LTRPKPQLVH GAFSTVASRV LDTFQDMNRD IEIWLKSVMS PLEAQVRDHQ
KQLRKRVDSI ERIHEATDTL EARIAELEAM LNTLDERSGT IADYSSRILS AGTLLETQSV
AA
|
|---|
| |