| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc0239 |
|---|
| Symbol | |
|---|
| ID | 1219042 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 263876 |
|---|
| End bp | 265714 |
|---|
| Gene Length | 1839 bp |
|---|
| Protein Length | 612 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637236596 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_518360 |
|---|
| Protein GI | 17544958 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1574] Predicted metal-dependent hydrolase with the TIM-barrel fold |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCCG ACCTCATCCT GCACAACGGC CGCATCCACA CCGTCGACCG CGACCGCCCC
ACCGCCAGCG CCGTCGCCGT GCGCGACGGC CGCTTCGTGG CCGTGGGCGA CGACGCCACC
GCGATGGCGC AGCGCGGCCC CGCCACCCGG GTGATCGACC TGCGCGGGCG CACCGTCATC
CCCGGCCTCA ACGATTCGCA CCTGCACCTG ATCCGCGGCG GACTGAACTA CAACCTCGAG
CTGCACTGGG AGGGCGTGCC GTCGCTGGCG GACGCGCTGC GCATGCTCCG GGAGCAGGCC
GCGCGCACGC CGTCGCCGCA ATGGGTGCGC GTGGTGGGCG GCTGGACCGA ATTCCAGTTC
GCCGAGCGCC GCATGCCCAC GCTCGACGAG CTGAACCAGG CCGCGCCCGA CACGCCGGTG
TTCGTGCTGC ACCTGTACGA CCGCGCGCTG CTCAACCGCG CCGCGCTCAG GCAGGTCGGC
TACACCCGGG ACACGCCCAA CCCGCCCGGC GGCGAAATCC AGCGCGATGC CGGCGGCGAG
CCCACCGGCA TGCTGATCGC CCGGCCCAAC GCGATGATCC TGTACGCGAC GCTGGCCAAG
GGGCCGAAGC TGCCGCCCGA ATACCAGGTC AACTCGACGC GGCAGTTCAT GCGCGAGCTC
AACCGCCTGG GCGTGACCAG CGCCATCGAC GCGGGCGGCG GCTTCCAGAA CTACCCGGAG
GACTACACCG TCATCCGCCA GCTGGCGCAG GAGAACCAGC TGACGGTGCG CATCGCCTAC
AACCTCTTCA CGCAGAAGCC GAAGGAAGAG CTGGCCGACT TCAAGCACTG GACCGGCAGC
GTGCCGTACC GCCAGGGCGA CGACTTCCTG CGCCACAACG GCGCGGGCGA GATGCTGGTC
TTCTCCGCCG CCGATTTCGA AGACTTCCTG CAGCCGCGCC CCGACCTGCC CGAGACCATG
GAGCCGGAGC TGGAGGGCGT GGTGCGTCAC CTGGTGGCGC AGCGCTGGCC GTTCCGCCTG
CACGCCACCT ACGACGAGTC GATCTCGCGC ATGCTCGATG TGTTCGAGCG CGTGGATCGC
GAGATTCCGT TCGACGGCCT GCCGTGGTTC TTCGACCATG CCGAGACCAT CTCGCCGAAG
AACATCGAAC GCGTGCGCGC GCTCGGCGGC GGCATCGCCA TCCAGGACCG CATGGCCTTC
CAGGGCGAAT ACTTCGTCGA GCGCTACGGC GCGGCCGCCG CCGGGCAGAC GCCGCCCATC
CAACGCATGC TGGCCGAAGG CGTGCCGGTC GGCGCCGGCA CCGATGCCAC GCGCGTGTCG
AGCTACAACC CGTGGACGTC GCTGTACTGG CTGGTGAGCG GGCGCACCGT CGGCGGCCTG
CCGCTGTATC CGCAAGGCCT GCCGCGCGAC GTGGCGCTCG CGCTGTACAC GCACGGCAGC
GCCTGGTTCT CGGCGGACCA GGGCAACAAG GGGCAGATCA AGGTGGGGCA ACTGGCCGAC
CTGGCCGCGC TGTCGGCGGA TTTCTTCTCG GTGGACGAAG CCGGCATCAA GGCCATCGAA
TCGGTGCTGA CGGTGGTGGA CGGGCGCGTC GTCTACGGTG CGGCGGAGTT CACCGAATAT
GGGCCGCCAC CGATTCCGGT GCTGCCGGAG TGGTCGCCGG TGGCGCGCGT GCCGGGGCAC
TGGCGGCCGG CCGCGCCGCT GCAGCGCCAG GTGCACCACT GCGCCGGCGC ATGCGGGGTG
CACGGCCATG CGCACCAGAA GGCGCGCACG GCCAACGTGC CTGCCGCCGA TTTCCGCGCG
TTCTGGGGCG CCTTCGGGTG TTCGTGCTTT GCGTTCTGA
|
|---|
| Protein sequence | MTADLILHNG RIHTVDRDRP TASAVAVRDG RFVAVGDDAT AMAQRGPATR VIDLRGRTVI
PGLNDSHLHL IRGGLNYNLE LHWEGVPSLA DALRMLREQA ARTPSPQWVR VVGGWTEFQF
AERRMPTLDE LNQAAPDTPV FVLHLYDRAL LNRAALRQVG YTRDTPNPPG GEIQRDAGGE
PTGMLIARPN AMILYATLAK GPKLPPEYQV NSTRQFMREL NRLGVTSAID AGGGFQNYPE
DYTVIRQLAQ ENQLTVRIAY NLFTQKPKEE LADFKHWTGS VPYRQGDDFL RHNGAGEMLV
FSAADFEDFL QPRPDLPETM EPELEGVVRH LVAQRWPFRL HATYDESISR MLDVFERVDR
EIPFDGLPWF FDHAETISPK NIERVRALGG GIAIQDRMAF QGEYFVERYG AAAAGQTPPI
QRMLAEGVPV GAGTDATRVS SYNPWTSLYW LVSGRTVGGL PLYPQGLPRD VALALYTHGS
AWFSADQGNK GQIKVGQLAD LAALSADFFS VDEAGIKAIE SVLTVVDGRV VYGAAEFTEY
GPPPIPVLPE WSPVARVPGH WRPAAPLQRQ VHHCAGACGV HGHAHQKART ANVPAADFRA
FWGAFGCSCF AF
|
|---|
| |