| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc0115 |
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| Symbol | |
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| ID | 1218918 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | - |
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| Start bp | 133929 |
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| End bp | 138947 |
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| Gene Length | 5019 bp |
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| Protein Length | 1672 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 637236472 |
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| Product | putative hemagglutinin-related protein |
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| Protein accession | NP_518236 |
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| Protein GI | 17544834 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCAAGC TGATACAAAC GATCCTGCTC GGCTGGCGCT TGCTTGCCGG GCTGCCGGTG
CTCGGACACC TCATGGCGCG CCCGTGCGCC CGGACCCGCC AGGGTGTGCT GGCGATGCTG
GCGCTGGGGG CTTGTCAGAT GATGCTGTCG TCCCCGGCAT GGGCGGCGGC GTGTACGGTC
TCCTTCTCGA CCACCGCCAA TACGCAGAAG TCCTACGTCT TCACGAGCGG CAACACATCC
AGTTGCGACC CGTTCCTGAT CGGCATCGCC TACGATTCGG CCGGCGACGC CAACAGCTCG
ACCGGGCCGG TCTTCAACAC AGCGACGTCG CAGGGCGGCA CGATCGCGAT CTACAACGGT
TCGGTGCCGC CGTCGGGCGA CCCCAATACC AACGGCTTCG TCTACACCCC GCCCACCAAT
TTCTCCGGCA CCGACACGGC CACCTTCTAC ACCAGCAACG ATGGGGTCAC CTGGCTGCCC
AACGGCACGG TGTCCATCAC GGTGACCAGC ACCGCGCCGA CCGTGACGGG CATCTCGCCG
TCCTCGGGCG GCACCGGCGG CGGCACCAGC GTCGCCGTGA CGGGCACCGG CTTCACCGGC
GCGACCGCCG TCAAGTTCGG CTCGACGAAC GCCGGCAGCT TCACGGTCAA CAGCGCCACA
TCGATCACGG CCACCTCGCC CGCCGGCTCG GCGGGAACGG TCGATCTCAC CGTGACCACC
TCCGGCGGCA CCAGCGCGAC CAGCTCCGCC GACCAGTTCA CCTATGCCGC CCCGCCCACG
GCCAATGCGA GCAGCGCCAC CGTCGCCCAC GGCAGCAGCA GCAACGCCAT CACGCTGAGC
ATCAGCGGCG GCACGCCCAC CAGCGTGGCC GTCTCGACGG CCGCCAGCCA CGGCACGGCC
ACCGCCAGCG GCACGTCGAT CACCTACACG CCCACGGCCT CGTATTCGGG CACCGACACC
TTTGCCTACA CGGCCAGCAA TGCCGGCGGC ACGTCCGCGG CCGCAACGGT GACGATCACG
GTGTCCAGCG CCACGGTCAG CTATGCGCCC GCATCACCGG CGGCCGGCAC GGTGGGCACG
GCGTATAGCC AGTCGGTGGC CTCCGCCAGC GGCGGCACCT CGCCCTACAC CTATGCGCTC
GCGTCCGGCT CGCTGCCGCC GGGCCTGACC CTGAGCACCG GCGGCACGCT CAGCGGCACG
CCCACCTCCG CCGGCACCTT CAGCTTCACG GTCACGGCTA CCGACAGCAG CACCGGCACG
GGGCCGTTCT CGGCCACCAG CGGCACGCTC AGCCTGACGA TCGCAGCGCC GACCATCACC
GTATCGCCCA GCACGCTGAC GAGCCCGACG GTCGGGGCGG CCTCCTCCCA GTCCGTCAGC
GCCAGCGGCG GGACGTCCCC CTACACCTAT GCGGTCACGG CCGGCGCGCT GCCGGCGGGC
ATGAGCCTGT CGTCGGCCGG GACCCTGTCG GGCACGCCCA CGGCGGGCGG CGCGTTCAGC
TTCACGGCAA CGGCCACCGA CAGCACCGGC GGCACGGGCC CCTATACCGG CAGCCGCAGC
TACACGCTCA CGGTCAACGC CCCGACACTG TCGATCACGC CCGCGGCGGG CAGCCTGAGC
GCGACCAGCG GCGTCGCCTA TAGCCAAGCG TTCGTCGCGG CCAGCGGCAC GGCGCCGTAC
ACCTATGCGC TATCGGTCAA CTCCGGCGCG CTGCCGACCG GCCTGTCGTT CAACACCGCC
ACCGGCATGC TGTCCGGCAC ACCGACCACG GCCGGCACGG CCAACTTCAC CGTCACGGGC
ACCGACAGCA GCACCGGCAC CGGCCCCTAC ACGGTCTCGG CAACCTACAC GCTGACCACC
TCCGCGCCGA CCATCTCGCT CGCCCCCGCC ACGCTGACCG GCGCCACGGT CGGCACGGCA
TACAGCCAGA GCGTGACGGC CAGCGGCGGC GCGACGCCGT ACACCTACGC CATCACCAGC
GGCGCGCTGC CGGCGGGGCT CAACCTGAAT ACCGGCACCG GCGCGCTCAC CGGCACCCCG
ACCGCCGCCG GCACGTTCAG CTTCACGGTG CGCGGCACCG ACGCCAACGC ATTCAGCGGC
ACCCGCAGCT ACAGCCTCAC CGTGGCCGCG CCCACCATCG CGCTGACGCC GACCACGCTC
GCCGGCGCCA CGGTCAGCTC GGCCTACAGC CAGAGCGTGG CAGCCAGCGG CGGCACCGCG
CCGTACACCT ATGCCGTGAC CAGCGGCGCC CTGCCGGCGG GTCTGTCGCT CAGCAGCGCC
GGCGTGCTGT CCGGCACGCC GACCGCGGGC GGCAGCTTCA GCGTCACGAT CAGCGCCACC
GACAGCACCA CGGGCTCGGG TCCGTTCACC GGCAGCCGGG CCTATACGCT GACGGTCGGC
TCGCCCACGC TGACCATCTC GCCGGCCTCC ACCGCCGGGC TGACCGCCAT GGCCGGCACG
AGCTACAGCC AGAGCTTCAG CGCCGGCGGC GGCGTCAGCC CCTACACCTA CGCGCTGACG
GTCAACACCG GCACGATGCC CGCCGGCCTG TCGTTCCATG CGGCCTCGGC CACGCTGTCC
GGCACGCCGA CCACGGCCGG GACGGTCAGC TTCACCGTCA CCGCCACCGA CGGCAGCTCG
GGCGCGGGCC CCTATGCCGT GTCCGGCACC TACACGCTGA CGGTCAGCGC CCCCACGCTG
ACCGTGGCCC CGGCAACCTT GCCCAACCCG GCCATCGGCA CGGCCTACAG CCAGTCCATC
ACGGCCAGCA GCGGGACCGC GCCGTACACC TATGCCGTGA CCAGCGGCGC GCTGCCGGCC
GGCCTGTCGC TGAGCAGCGC GGGCGTGCTG TCGGGCACGC CGACGGCGGG CGGCAGCTTC
GGCTTCACCG TCACGGCAAC GGATGCCAAC AGCTTCACCG CCAGCCGCGC CTACAGCATC
ACCATCGGCG CCGCGACCGT CGCGCTGAAT CCGGCCACCG TGCCGGGCGC CACGCTCAAC
ACGGCCTACA GCCAGACGTT CACGGCCAGC GGCGGCATCG GTCCGTACAC TTACGCCGTG
GCCTCCGGCA CGCTGCCGGC CGGCGTGAGC CTGAACAGCA CCACCGGCGT ACTGAGCGGC
ACGCCCACCG CCCTGGGCAG CAGCACCTTC AGCATCCGGG CAACCGACAG CAGCACCGGC
GCCGGCGCGC CCTACACCGG CACGCGCGGC TACACGCTCG TGGTCGGGCA GGCCATCGGG
ACCGCGCCGC CCGTGACCGC GACCACCACA TCCACCGTGC CGGTCACGCT GCACCCCACG
GCCAATGCGA CCGGCGGGCC GTTCTCGTCG GTGGTGATCG TCGCCGCGCC CGCGAGCGGC
ACGGCCGTGG TCAACGGCAT GGACATCGTC TACACGCCCA CCCCGACCAC CTCGGGCAAC
GTCGCCTTCA CCTTCGCGCT GGTCAACACG GCCGGCACCT CCGCGCCGAT CCAGGCGACG
GTGACCGTCA ATGCCGTGCC GATCGCCGTG GCGCAGAAGA CGGCCAGCAC GGCGGCAGGC
CAGACCGTGA ATGTCGACCT CACGGACGGC GCCACCGGCG GGCCGTTCAC CGGCGCGGCC
ATTGTGTCGG TGGTACCGGC CAATGCCGGC ACGGCGACCA TCATGCAGCA GACATCGCAG
ACGACGGCGG GCGTCAAGGC GCTCGCGGCG GCCGCACCGG TCTACCTGCT CAGCTTTACG
CCGGCGAGCG CCTTCAGCGG CACGGCCACC CTGACCTACA CGCTGTCCAA CGCCGTCTCC
ACCTCCACGC CGGCCGTCGT GCAGGTGAGC GTGGCACCGC GGCGCGATCC GTCCACCGAT
CCGGACGTCA ACGGCCTGAT CAATGCGCAG ATCCAGGCCG CGCGCCGCTT CGCCACCACG
CAGATCGCCA ACTACCATCA GCGGCTCGAA GCCCTGCACG GCACCGGCCG CGCACCGTCG
GGCAACGGCC TCACGGTGGC GCTGCCGGGC CCGCGCGGCG ATGCGCAGGC GCGCTGCCAG
GACGTCTTCG GCATTGCCGC CCGCGACGCC TGCCTGCGCG GCGACAGCAC CGCCGGCAAA
CCGGCCTTCG CGCGCGGCAA GCGCAACGCT GACCTCCAGG CAAGTCGGGG CGACGCGGAT
GCCGGCCCCG ACTTGCCGGG AGCCGACGCC ACCGCCGACG CCGGCCAGCC GGACCTCGCC
TTCTGGACCG CCGGCACGCT CGATTTCGGC TTCGCCAACA CCAGCGCGCA GCGCTCGGGC
TTCCGCTTCA CGACCGGCGG CATCACGGCG GGCGCCGATT ACCGCGTATC CGATCGGCTC
TCCGTGGGCG CGGGCTTCGG CTACGGGCGC GATTCGACCG ACATCGGCAA CGCCGGCACC
AAGAGCACCG GCGACAGCTA CAGCGTCGCG CTCTACGGCA GCTATCGTCC GCTGCCCACG
CTGTTCGTCG ATGGCGTGGC CGGCTTCGGC ACGCTGAGCT TCGATTCGCG CCGCTGGGTG
AGCGATGCCA ATGACTACGC GATGGGCTCG CGCAACGGGC ATCAGGTCTT CGCTTCGGTC
TCGGCGGGGT ATGAGCACCG CGACAGCGTC TGGCTGTTCT CGCCATACGG ACGCCTGTCG
GTGTCGGAAT CGACGCTGGA CCCGTTCAGC GAGACCAGCG CCGGGCTCAA CGCGCTGACG
TACTTCCAGC AGACGGTGAC GACCGTGTCC GGCTCCCTGG GCCTGCGCAC GGAATACGCC
CAGAAAACGC GCTGGGGCAC GTTCCTGCCC TATGCGCGCG TGGAGTATCA GCACGACTTC
AACGGCCAGA GCAACGCCGG CCTCGCCTAT GCGGACCTGG CATCGGCGGG CCCCGCCTAC
TACGTGATGG GCAGCCCGTA CGGCCGCGAC CGCATGCAGG TGGGCCTGGG CACCAAGTTC
CGCACCGGCC CGCTCACGTT CGGCCTGGAC TACAGCGTGA TGGTCGGCAT GGGTGGGCTG
CAGCAGGGCG TGCGGCTGAC CTTCGCGGCG CCGTTCTGA
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| Protein sequence | MRKLIQTILL GWRLLAGLPV LGHLMARPCA RTRQGVLAML ALGACQMMLS SPAWAAACTV
SFSTTANTQK SYVFTSGNTS SCDPFLIGIA YDSAGDANSS TGPVFNTATS QGGTIAIYNG
SVPPSGDPNT NGFVYTPPTN FSGTDTATFY TSNDGVTWLP NGTVSITVTS TAPTVTGISP
SSGGTGGGTS VAVTGTGFTG ATAVKFGSTN AGSFTVNSAT SITATSPAGS AGTVDLTVTT
SGGTSATSSA DQFTYAAPPT ANASSATVAH GSSSNAITLS ISGGTPTSVA VSTAASHGTA
TASGTSITYT PTASYSGTDT FAYTASNAGG TSAAATVTIT VSSATVSYAP ASPAAGTVGT
AYSQSVASAS GGTSPYTYAL ASGSLPPGLT LSTGGTLSGT PTSAGTFSFT VTATDSSTGT
GPFSATSGTL SLTIAAPTIT VSPSTLTSPT VGAASSQSVS ASGGTSPYTY AVTAGALPAG
MSLSSAGTLS GTPTAGGAFS FTATATDSTG GTGPYTGSRS YTLTVNAPTL SITPAAGSLS
ATSGVAYSQA FVAASGTAPY TYALSVNSGA LPTGLSFNTA TGMLSGTPTT AGTANFTVTG
TDSSTGTGPY TVSATYTLTT SAPTISLAPA TLTGATVGTA YSQSVTASGG ATPYTYAITS
GALPAGLNLN TGTGALTGTP TAAGTFSFTV RGTDANAFSG TRSYSLTVAA PTIALTPTTL
AGATVSSAYS QSVAASGGTA PYTYAVTSGA LPAGLSLSSA GVLSGTPTAG GSFSVTISAT
DSTTGSGPFT GSRAYTLTVG SPTLTISPAS TAGLTAMAGT SYSQSFSAGG GVSPYTYALT
VNTGTMPAGL SFHAASATLS GTPTTAGTVS FTVTATDGSS GAGPYAVSGT YTLTVSAPTL
TVAPATLPNP AIGTAYSQSI TASSGTAPYT YAVTSGALPA GLSLSSAGVL SGTPTAGGSF
GFTVTATDAN SFTASRAYSI TIGAATVALN PATVPGATLN TAYSQTFTAS GGIGPYTYAV
ASGTLPAGVS LNSTTGVLSG TPTALGSSTF SIRATDSSTG AGAPYTGTRG YTLVVGQAIG
TAPPVTATTT STVPVTLHPT ANATGGPFSS VVIVAAPASG TAVVNGMDIV YTPTPTTSGN
VAFTFALVNT AGTSAPIQAT VTVNAVPIAV AQKTASTAAG QTVNVDLTDG ATGGPFTGAA
IVSVVPANAG TATIMQQTSQ TTAGVKALAA AAPVYLLSFT PASAFSGTAT LTYTLSNAVS
TSTPAVVQVS VAPRRDPSTD PDVNGLINAQ IQAARRFATT QIANYHQRLE ALHGTGRAPS
GNGLTVALPG PRGDAQARCQ DVFGIAARDA CLRGDSTAGK PAFARGKRNA DLQASRGDAD
AGPDLPGADA TADAGQPDLA FWTAGTLDFG FANTSAQRSG FRFTTGGITA GADYRVSDRL
SVGAGFGYGR DSTDIGNAGT KSTGDSYSVA LYGSYRPLPT LFVDGVAGFG TLSFDSRRWV
SDANDYAMGS RNGHQVFASV SAGYEHRDSV WLFSPYGRLS VSESTLDPFS ETSAGLNALT
YFQQTVTTVS GSLGLRTEYA QKTRWGTFLP YARVEYQHDF NGQSNAGLAY ADLASAGPAY
YVMGSPYGRD RMQVGLGTKF RTGPLTFGLD YSVMVGMGGL QQGVRLTFAA PF
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