| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc0088 |
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| Symbol | slt |
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| ID | 1218891 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | - |
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| Start bp | 101627 |
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| End bp | 103579 |
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| Gene Length | 1953 bp |
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| Protein Length | 650 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637236445 |
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| Product | soluble lytic murein transglycosylase precursor transmembrane protein |
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| Protein accession | NP_518209 |
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| Protein GI | 17544807 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGTGA AGGGCAAGGC AGTATATCGC GCGGTGGCGC TGGCTTTCGC GGGCGTGATC
GGCATGGGCG CGGTGGGGCC GGTGCCCCTG GCGGTGGCCG GCAAGCGGCC GGCGCTGCAG
GTCATTCCGG CCAATCCGGA CGATGCCTTC GTCGAGTTGC GCAACGCCGC GCGCCGCAAC
GACGTGGCCC GCAGCTGGGA GCTCGCGGAC AGCCTGTCCG ACTACCCGAT CCCATCCTAC
GTCCAGTATT TCCGCATCAA GCCGCAGCTG TTCGACGCCA GCGGCTACGC GCGCACCGAT
GCGCCGGAAG ACGAGATCCG CTCGTTCCTG CAGCGCTACA AGGGCGAGGC CATCGCCGAC
CGCCTGCGCA ACGACTGGCT GCTGGTGCTC GGCAAGAAGC GCGACTGGGC CACCTTCGAC
GCCGAATACC CGCAGTTCGT GCTCAAGGAC GACACCCAGG TCGAGTGCTA CGCGCTGCTG
TCGCGCGCAA TGAAGGGCCA GAACGTGGCC GCCGACGCGC GCAACACCCT GTCCGATCCC
AAGGGCTACG GCGAGGGCTG CGTCGACCTG ATCGGTTATC TCGCCCAGTC CGGCCAGCTC
GCGCGTGCCG ACGTCGCCTT CGCGGCGCGG CTGTCGCTGG AGCAGAACCT CATCACGCAG
GCCGCGCGCA TCGCCGCCGT GCTGCCGGAG GGCGACCGGG TCGACAACGA TACGCTCGCC
AACGTCACGC GCATGGCGCG CAGCGACCCG TCGCAGGCCA CCGCCTACCT GATGGCGCAA
AGCGGCGGCC TGTCGAAGGA AGAGCAGGGC GCGGGCTGGG GCGTGATCGG CCAGTACGCC
GCCAAGAAGC AGACGCCCGA TGCGCTCGAC GCCTACCGCC GCCAGATGAC GCTGGGCGGC
GACGCCTGGC TGTCGGACGA CTCGCAGGAA TGGCGCGTGC GCACCGCCCT GCGCGCCGGC
GACTGGAAGA TGGTGCGCCA GGCCATCGAT TCGATGCGCG CGCCGCTGCG CAGCCGCGAT
CCGGCCTGGA CCTACTGGTA CGGCCGTGCG CTCAAGGCCG ACGGCCGCAA CGAGGACGCG
AAGCAGCAGT TCCAGTCGAT CGCCGGGCAG TTCAACTTCT ATGGCCAGTT GGCGCTGGAA
GAGCTCGGCC AGCGCATCAC CGTGCCGCAG CGCACGGCCG TGACCGATGC CGAGATCGAC
CCGATGGGCC GCAACCATCC GGGCTTCGGC CGCGCCAAGC GGCTGTATGA CCTGAACCTG
CGTTTCGAGG GCAACCGCGA GTGGAACTGG GAGCTGCGCA ACATGAGCGA CCGCGAGCTG
CTGGCGGCGG CGGAGTATGG CCGCAAGCTC GGCATGCTCG ACCGCACCGT CAACTCGGCC
GACAAGACCC GCAACGAGCA TGACTTCTCG CTGCGCTTCC CGATGCCGTT CCGCAACGTG
GTCGAGCGCA ACGCCGATGC CGTCGGCCTG GACGTCGCCT GGACCTACGG CCTGATCCGC
CAGGAATCGC GCTTCATCAT GGACGCGCGC TCCTCGGTGG GCGCATCGGG CCTGATGCAG
GTGATGCCCG AGACCGCCAA GCGCGTCGCC AAGAAGATCG GCCTGCCCGT CTTCCGTCCC
TCGCAGATGA GCGACATCGA TACCAACGTG CTGCTCGGCA CCAGCTACCT GTCGATGATC
CTGACCGACC TCGACAGCTC GATGACGCTG GCCACCGCCG GCTACAACGC CGGCCCCGGC
CGGCCCAAGC GCTGGCGCTC CACGCTGACG CGCCCGGTGG AAGGCGCGAT CTTCGCCGAG
ACCATCCCCT TCAACGAGAC CCGCACCTAC GTGAAGAACG TACTGTCGAA CGCCACCTAC
TACGGTGCCC TGCTGACCGG CCGGCCGCAA TCGCTGAAAG ACCGCCTGGG CAAGGTCGCG
CCCGAGGCCG TGACGCCGGA CGATCTGCCG TAG
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| Protein sequence | MTVKGKAVYR AVALAFAGVI GMGAVGPVPL AVAGKRPALQ VIPANPDDAF VELRNAARRN
DVARSWELAD SLSDYPIPSY VQYFRIKPQL FDASGYARTD APEDEIRSFL QRYKGEAIAD
RLRNDWLLVL GKKRDWATFD AEYPQFVLKD DTQVECYALL SRAMKGQNVA ADARNTLSDP
KGYGEGCVDL IGYLAQSGQL ARADVAFAAR LSLEQNLITQ AARIAAVLPE GDRVDNDTLA
NVTRMARSDP SQATAYLMAQ SGGLSKEEQG AGWGVIGQYA AKKQTPDALD AYRRQMTLGG
DAWLSDDSQE WRVRTALRAG DWKMVRQAID SMRAPLRSRD PAWTYWYGRA LKADGRNEDA
KQQFQSIAGQ FNFYGQLALE ELGQRITVPQ RTAVTDAEID PMGRNHPGFG RAKRLYDLNL
RFEGNREWNW ELRNMSDREL LAAAEYGRKL GMLDRTVNSA DKTRNEHDFS LRFPMPFRNV
VERNADAVGL DVAWTYGLIR QESRFIMDAR SSVGASGLMQ VMPETAKRVA KKIGLPVFRP
SQMSDIDTNV LLGTSYLSMI LTDLDSSMTL ATAGYNAGPG RPKRWRSTLT RPVEGAIFAE
TIPFNETRTY VKNVLSNATY YGALLTGRPQ SLKDRLGKVA PEAVTPDDLP
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