| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc0049 |
|---|
| Symbol | |
|---|
| ID | 1218851 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 53181 |
|---|
| End bp | 54437 |
|---|
| Gene Length | 1257 bp |
|---|
| Protein Length | 418 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 637236405 |
|---|
| Product | putative hemaggltinin-related protein |
|---|
| Protein accession | NP_518170 |
|---|
| Protein GI | 17544768 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2706] 3-carboxymuconate cyclase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCGTT TCAACCGCTT TCGCAGAACC CTCATGCAGT GGACCGGTAG CCTGCCCTTG
CTGGGCGCAT TGCCTCTTTC CAAGCTTGCC CAGGCGCAGG GCGCCGAGCA GCCCGCCGCC
TCTGGCACGC CGCCGGCCGG CGGCACGCGA GCGCCGCGCT TCGCCTATGT CGGCACCTAT
ACGTTCGACG CGCCGGGCGG CACGGCGGGC GGGCCACCCG CGCGCGGCAT CTACGTGCTG
GCGCCGCGCG GCGATGCCTG GTCGCAGGCG CAGGTGGTGG AGAGCGCCAA CCCGTCGTTC
CTGGCGGTGC ACCCGAATCA GCGCTGCCTG TACGCCATCA ACGAGATCGA TGTCTACGAA
GGCCGCGCCA CCGGCACCGC CGAGGCCTAT GCCATCGACC CGCGCGACGG CCGGCTGACG
CTGCTGAACC GGCAGCCGCT GTCGCTGTCG GGCACGATTC CCGCGCACGT GGCGGTGTCG
CCGGACGGGC AGCACCTGGC CGTGGCACTG TACGGCGGCG GCGCGTACAA CGTGCTGCCG
ATCGGCGCGG ACGGCAGGCT GGGCAGCGTC TCGGGCCTGT TCAAGGACAC CGGCTCCGGG
CCCGACACCG CGCGCCAGGA GGCGCCGCAC GCCCACATGG TGCTGTTCGA CCCGACCGGC
CGGCACATCC TGGGCACGGA TCTCGGCACC GACCGCATCA ACGTGTTCGC GCTGGAAGAC
GGCAAGCTGA CGCCGCGCGA CCGCGCCCAG CTCAAGCCCG GCGGCGGCCC GCGCCACCTG
GCGCTGCATC CGTCCGGCAA GCTGCTCTAC GTCATCAGCG AACTGGACAG CACCGTGGCC
TGCCACGGCT ACGACCCCGC CACGGGGCGC GTGCTGGACG AGCGCCAGCG CATCGCCACC
ACGCCGGCCG ACTACACCGG GCAGAAGAGC GGCGCGGCGC TGGTGATGCA CCCGTCGGGG
CGCTTCCTGT ATGCCTCCAA CCGGCGGCTG AAATCGGAGC ACCCGCTGGC CGACAGCATC
GCCGCGTTCA GCATCGACCC GGCCTCCGGC AGGCTCGCCG CCCTCCAGTA CTGGAGCGAG
GGCCTGCGCT TCCCGCGCGC GCTGACCATG GCGGACGACG GCCGCCACCT CTACGCGCTG
AGCCAGAAGG GCGACACGAT CCTGCGCCTG CGCATCGACG ACGCCACCGG CAGGCTGGAT
CAGCCGGCCG TGGTCTCCAA CGTGCCGACG CCGGTGTGCC TGGTGTTCGC CGGCTAG
|
|---|
| Protein sequence | MTRFNRFRRT LMQWTGSLPL LGALPLSKLA QAQGAEQPAA SGTPPAGGTR APRFAYVGTY
TFDAPGGTAG GPPARGIYVL APRGDAWSQA QVVESANPSF LAVHPNQRCL YAINEIDVYE
GRATGTAEAY AIDPRDGRLT LLNRQPLSLS GTIPAHVAVS PDGQHLAVAL YGGGAYNVLP
IGADGRLGSV SGLFKDTGSG PDTARQEAPH AHMVLFDPTG RHILGTDLGT DRINVFALED
GKLTPRDRAQ LKPGGGPRHL ALHPSGKLLY VISELDSTVA CHGYDPATGR VLDERQRIAT
TPADYTGQKS GAALVMHPSG RFLYASNRRL KSEHPLADSI AAFSIDPASG RLAALQYWSE
GLRFPRALTM ADDGRHLYAL SQKGDTILRL RIDDATGRLD QPAVVSNVPT PVCLVFAG
|
|---|
| |