| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | WD1298 |
|---|
| Symbol | rpoD |
|---|
| ID | 2738181 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Wolbachia endosymbiont of Drosophila melanogaster |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002978 |
|---|
| Strand | - |
|---|
| Start bp | 1239929 |
|---|
| End bp | 1241857 |
|---|
| Gene Length | 1929 bp |
|---|
| Protein Length | 642 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 637173448 |
|---|
| Product | RNA polymerase sigma factor RpoD |
|---|
| Protein accession | NP_967007 |
|---|
| Protein GI | 42521092 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.902939 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGTCAA CTATTAATGA TGCAGAAGAT AAGAAAAAAA TTATCAAAGA TCTGGTAACT
AAGAGTATAA AAAAGGGTGG TTTTATCACC TTTGATGATA TAAATGATAA ATTATCAGAT
GAAAATTTTT CATCTGACTT TATAGATGAT GCTATATCTT TATTGCAGGA TTCCGGAATT
AATGTGCTTG AAAGTAGCGA AGATGAAGAA GATATTCCTT CCAACAGTGA TGATAGTAAA
CTTGATGATG ATGACACATC GCCAAATGTT ACTGCAACTT TAGTACAAAA TGATGATCCA
GTGAGGATTT ATTTACAAGA CATGAGCTCC GTAAAGCTTT TATCAAGGGC AGATGAAATC
GAGATAGCAA AAAAAATTGA ATCTGGAAAG CATAACATGT TACGTGCAAT AATTGAAACA
TCAGTAACAT TAAAGGTGAT AAAAGTATGG CGTGATGATT TAAGTAATGG AGCTCTCTTA
CTGAGAGAAA TTATAGATCT GGATGCAATG TATAACTCTG ATTTTAATGT GGTACCCAAA
GAAGAAAGTG AAGAGAGTGA AGAAAGTGCT GAAGATGTTG AGGATTCTGA GGATGTTTCT
GAAGATGCTG AGTACTGTAG TGATGATGAG AAAGACGGTA ATAATGAAGA TATAAGTTCA
GTCAATTTAA ATGTTTCTAT TCTTGAAATG GAAAGTGACT TATTGCCAAA GGTCATAGTT
GCATTGGATG AGATAATTAC TTTAACAAAT GAAGCGTTGA TATTAAGAAA AAATTCTAAA
AATTTCTCTA ATGAGCTAGA AAATTTGTAT AATCAAATAT GGTCTATAGC ATTACAAATT
AAGTTAAGTG ATGCTGCTGT TGCCAGAATT ACACAAGAAC TTTATAAGAT CAATAGATCC
ATTACGCTTG AAGAGGCTAA TCTTATTGCT GAGGCTAGAA AATACGATAT CGATAGAGAA
AGTTTCTATA AAGTTTATGA TGACGTGCTT TTAAAGCACG AATTGAAAAA GATAAGTCTT
TTAAAGATCA ATGAAAATCA GTCCTCTTTT ACAGGTGAAT TAAAAAACAA ATTTTTAAGG
TTTATAGACG ATAAATCTGA ACATATAGCT AGTACCTTGA ACGGTATTAA GCAGCATATA
CAGGAAGATA ACGTACAAGA ATTTAAGGAG CTAATCAAGA GAATACAAAA ACACGAACGA
GAAGTCTCTG AAGCAAAGCA AGAAATGATT AAGGCTAACT TAAGGCTAGT AGTTTCCATT
GCTAAGAAGT ATTCAAAAAG AGGCCTTGAT CTGCTTGATT TGATACAAGA AGGCAATATT
GGTCTTATGA AGGCCGTGGA TAAGTTTGAT TACAAACGTG GATATAAATT TTCAACTTAT
GGCACTTGGT GGGTAAGACA ATCAATCACT AGAGCAATAC CTGAGCAGTC CAAAGTAGTT
AGAATACCAG TTCATATGGT GGAAATTATC AGTAAAATCA ACAGAGCATT AAGAAAGATG
ACTCATGAGA TGGGAAGAGA GCCGACGTTA GAGGAATTGA GTGTAGAACT GACAATGCCA
CTGGAAAGAA TACGCAAAGT TATGAAAATA GCAAGGGATC CAGTAAGTCT TGAAGCTCCA
ACAGGAAAAG ATGATAGTAG TACCTTTGGT GATTGTATAG AAGACAAGCG AGTCTCCAGG
CCAGAGGATG CTGCAATACT TGCTGACTTG CGTGGCATTA CAACCAATGT TCTTGCAACT
TTAACACCAA AGGAAGAAAG AATTTTAAGA ATGCGTTTTG GCCTTGGTAA AGATGGGAAG
GAACATACTT TAGAAGAAGT AGGAAAAATT TTTAATGTAA CACGTGAGAG AATTAGGCAA
ATAGAGGCAA AAGCACTGCG CAAGTTGAAA CATCCAAGCC GTGCTAGAAA ACTTAGAGGG
TTCTTTTAA
|
|---|
| Protein sequence | MMSTINDAED KKKIIKDLVT KSIKKGGFIT FDDINDKLSD ENFSSDFIDD AISLLQDSGI
NVLESSEDEE DIPSNSDDSK LDDDDTSPNV TATLVQNDDP VRIYLQDMSS VKLLSRADEI
EIAKKIESGK HNMLRAIIET SVTLKVIKVW RDDLSNGALL LREIIDLDAM YNSDFNVVPK
EESEESEESA EDVEDSEDVS EDAEYCSDDE KDGNNEDISS VNLNVSILEM ESDLLPKVIV
ALDEIITLTN EALILRKNSK NFSNELENLY NQIWSIALQI KLSDAAVARI TQELYKINRS
ITLEEANLIA EARKYDIDRE SFYKVYDDVL LKHELKKISL LKINENQSSF TGELKNKFLR
FIDDKSEHIA STLNGIKQHI QEDNVQEFKE LIKRIQKHER EVSEAKQEMI KANLRLVVSI
AKKYSKRGLD LLDLIQEGNI GLMKAVDKFD YKRGYKFSTY GTWWVRQSIT RAIPEQSKVV
RIPVHMVEII SKINRALRKM THEMGREPTL EELSVELTMP LERIRKVMKI ARDPVSLEAP
TGKDDSSTFG DCIEDKRVSR PEDAAILADL RGITTNVLAT LTPKEERILR MRFGLGKDGK
EHTLEEVGKI FNVTRERIRQ IEAKALRKLK HPSRARKLRG FF
|
|---|
| |