Gene MCA1808 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMCA1808 
Symbol 
ID3103363 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethylococcus capsulatus str. Bath 
KingdomBacteria 
Replicon accessionNC_002977 
Strand+ 
Start bp1940055 
End bp1941155 
Gene Length1101 bp 
Protein Length366 aa 
Translation table11 
GC content63% 
IMG OID637170968 
ProductABC-transporter permease protein, putative 
Protein accessionYP_114246 
Protein GI53804111 
COG category[V] Defense mechanisms 
COG ID[COG0577] ABC-type antimicrobial peptide transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value0.218527 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGGCTGA CTTTCGCCTC GCTGATCATG ACACAGCAGC CAGCCATCTT CGTCGGGTTG 
ATGATGCGCT CGTACAGTTT CGTCACCGAC GTCGGCCTCC CCGATATCTG GGTGATGGAT 
CCCAAGGTGC AGTTCGTCGA CGACATCAAG CCGCTGCAGG ACACCAAACT GTTCCGGGTG 
CGGGGCGTCA GCGGGGTGGA CTGGGCGATG CCCATGTACA AGGGGATGAT CAAGGCCCGG 
CTGGCTGACG GGACCTTCCA GACCTGCAAC GTGATCGGTC TGGACGACGC CACCCTCATC 
GGCGGACCGC CGGTCATGCT GGAAGGCCGG CTGGAGGATT TGCGGCGGGC CGATTCGGTC 
ATCGTCGACA TCGACGGCGC CCGCGATAAG CTCGCCCGAC CGTCGAAGGA TCCGGCCGGC 
AAGCCCGTAC CGCTGAAAGT GGGCGACACG CTGGAGCTCA ACGACCGGCG CGCGGTGGTG 
GTCGGCATTG CCAAGACCAC GCGGACTTTC CAGTCCCAGC CGGTGGTCTA TACGACCTAC 
TCGCGGGCCA CGCTGTATGC ACCCAGGGAG CGGAAGCTCC TGTCCTTCGT GCTGGTCAAG 
GCCAGGCCAG GACAGGAGGT CCACGCGTTG ACCCGCCGCA TCCGGGAAAC CACCGGGCTG 
GCTGCCTATA CCCAGGCCGA GTTCGAGGAG CTTACCGTCA ACTATTTTCT CAAGAACACC 
GGCATCCCGA TCAACTTCGG CATGTCGGTC ACCCTCGGAT TCATCGTGGG CGCGGCCATT 
GCCGGCCAGA CCTTCTACAA CTTCACCCTG GAAAACATCC GCCAGTTCGG CGTGCTGAAA 
GCCATGGGGG CGGGCAACGG CACCCTGCTG GGCATGATCC TGCTGCAGGC GACGCTGGTG 
GGTATGGTCG GCTACGGGCT GGGGGTCGGG CTGACCTCGC TGTTCGGCTG GTCCATGCGC 
AATACCATTC TGGCTTTCAA GTTCCCCTGG CAGCTGCTGG TGTTCAGCGG ACTGGGAGTG 
ACACTGATCT GCGTGTTCTC GGCCCTCCTG AGCATCCGCA AGGTGATCAA ACTCGAGCCT 
GCCATCGTGT TCAAGGGCTG A
 
Protein sequence
MGLTFASLIM TQQPAIFVGL MMRSYSFVTD VGLPDIWVMD PKVQFVDDIK PLQDTKLFRV 
RGVSGVDWAM PMYKGMIKAR LADGTFQTCN VIGLDDATLI GGPPVMLEGR LEDLRRADSV 
IVDIDGARDK LARPSKDPAG KPVPLKVGDT LELNDRRAVV VGIAKTTRTF QSQPVVYTTY 
SRATLYAPRE RKLLSFVLVK ARPGQEVHAL TRRIRETTGL AAYTQAEFEE LTVNYFLKNT 
GIPINFGMSV TLGFIVGAAI AGQTFYNFTL ENIRQFGVLK AMGAGNGTLL GMILLQATLV 
GMVGYGLGVG LTSLFGWSMR NTILAFKFPW QLLVFSGLGV TLICVFSALL SIRKVIKLEP 
AIVFKG