Gene SERP2539 details

Gene Information

• Locus tag: SERP2539
• ID: 3241592
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Staphylococcus epidermidis RP62A
• Kingdom: Bacteria
• Replicon accession: NC_002976
• Strand: -
• Start bp: 2596415
• End bp: 2598382
• Gene Length: 1968 bp
• Protein Length: 655 aa
• Translation table: 11
• GC content: 37%
• IMG OID: 637169213
• Product: DHH family protein
• Protein accession: YP_190080
• Protein GI: 57865908
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG3887] Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain

Plasmid Coverage information

• Num covering plasmid clones: 26
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACCGTC AATCCACTAA AAAAGCTTTG CTCATACCGT TTATTTTAAT GGTACTCACT 
GCCATAGCAC TTGTCGTCGT GTGGTTTATT TTTAACCAAT TAGTGGCAGG TATTGCTACA 
GCTATACTCA TTGTGATGAT TATTATTAGT GGCGTGTTAT TGAGAAAAGC ATTTCTAAAA 
ATGGATAATT ATGTGGATGA TTTAAGTGGT CACATCTCGG CAAGTAGTAA TAAGGCGATT 
AAGCACTTGC CTATAGGGAT GATTGTGTTA GATGAAGATA ATCACATTGA GTGGATGAAC 
CAATTTATGA CAGATCACAT TGAAACGAAT GTGATTTCTG AAAATGTCAA TGAAGTCTTC 
CCTAACATAT TAAAACAACT GGAAAAAGTT CAAGAAGTAG AAATAGAAAA CAACAATTAT 
TACTATCATG TACGATATTC AGAAAACGAG CATTGTTTAT ACTTCTTTGA TATGACTGAA 
ACTGAACGTA CAAATGAACT ATATGAAGAT TCCAAGCCGA TTATTGCAAC AATATTTTTA 
GATAATTACG ATGAAATCAC TCAAAATATG AACGATACAC AACGTTCTGA AATTAACTCT 
ATGGTGACAC GTGTGATTAG TCGTTGGGCA CAAGATTACA ATATTTACTT CAAACGTTAC 
AATTCAGATC AATTTGTAGC TTACTTTAAC CAAAAAATAT TGGCTGAACT AGAAGATTCT 
AATTTTGAAA TCTTAAGCCA ATTAAGAGAG AAGAGTGTGG GTTACCGCGC ACAACTAACA 
TTAAGTATTG GTGTAGGTGA AGGCACGGAG AACCTTATTG ATTTAGGTGA ATTATCACAA 
TCTGGTTTAG ACCTCGCGTT AGGTCGTGGT GGTGACCAAG TTGCAATTAA GAATATGAAC 
GGCAATGTAA GATTCTATGG TGGTAAGACT GACCCTATGG AAAAACGTAC GCGTGTACGT 
GCGCGTGTGA TTTCACATGC CCTCAAAGAT ATTCTTACTG AAGGCGATAA AGTTATCGTC 
ATGGGACATA AGCGACCAGA TTTAGATGCT ATAGGTGCAG CTATCGGAGT TTCGCGCTTT 
GCATCAATGA ATAATTTAGA GGCATTTATC GTTCTTAATG ATTCTGATAT TGATCCGACA 
TTACGTCGTG TTATGGATGA GATTGATAAG AAACCGGAAC TAAAAGAACG CTTTGTAACA 
TCGGATGAGG CTTGGGATAT GATGACTTCT AAGACGACTG TCGTTGTTGT AGATACACAT 
AAACCTGAAA TGGTCTTAGA TGAAAATGTC TTAAATAAAG CAAACCGCAA AGTGGTCATT 
GATCATCATA GACGTGGCGA AAGCTTTATT TCAAATCCAT TACTTGTGTA TATGGAACCT 
TACGCTAGCT CAACTGCTGA GCTCGTAACG GAATTACTAG AATATCAACC AACTGAACAG 
AGATTGACTC GTTTAGAATC AACTGTTATG TATGCAGGTA TTATAGTAGA TACAAGAAAC 
TTTACGTTAA GAACAGGTTC CAGAACATTT GATGCTGCAA GTTATTTACG TGCACATGGC 
GCTGATACAA TCTTAACGCA ACATTTCTTA AAAGATGATG TCGATACGTA TATCAATCGT 
TCAGAATTGA TAAGAACAGT TAAGATACAA GATCAAGGTG TAGCCATTGC ACATGGTTCA 
GATGATAAAA TTTATCATCC TGTAACGGTT GCACAAGCTG CCGATGAGTT GTTAAGTTTA 
GAAGGCATTG AAGCATCTTA TGTAGTAGCT AAACGTGAAG ACAACCTGAT TGGTATCTCA 
GCACGTTCTT TAGGTTCCAT AAATGTTCAA TTAACAATGG AAGCGTTAGG TGGCGGTGGC 
CATCTGACAA ATGCTGCGAC ACAAATAAAA GGTGCGACAA TAGATGAAGC AATAGAACAA 
TTACAACAAG CAATTACAGA ACAAATGAGT AGGAGTGAAG ACGCATGA 

 

Protein sequence

MNRQSTKKAL LIPFILMVLT AIALVVVWFI FNQLVAGIAT AILIVMIIIS GVLLRKAFLK 
MDNYVDDLSG HISASSNKAI KHLPIGMIVL DEDNHIEWMN QFMTDHIETN VISENVNEVF 
PNILKQLEKV QEVEIENNNY YYHVRYSENE HCLYFFDMTE TERTNELYED SKPIIATIFL 
DNYDEITQNM NDTQRSEINS MVTRVISRWA QDYNIYFKRY NSDQFVAYFN QKILAELEDS 
NFEILSQLRE KSVGYRAQLT LSIGVGEGTE NLIDLGELSQ SGLDLALGRG GDQVAIKNMN 
GNVRFYGGKT DPMEKRTRVR ARVISHALKD ILTEGDKVIV MGHKRPDLDA IGAAIGVSRF 
ASMNNLEAFI VLNDSDIDPT LRRVMDEIDK KPELKERFVT SDEAWDMMTS KTTVVVVDTH 
KPEMVLDENV LNKANRKVVI DHHRRGESFI SNPLLVYMEP YASSTAELVT ELLEYQPTEQ 
RLTRLESTVM YAGIIVDTRN FTLRTGSRTF DAASYLRAHG ADTILTQHFL KDDVDTYINR 
SELIRTVKIQ DQGVAIAHGS DDKIYHPVTV AQAADELLSL EGIEASYVVA KREDNLIGIS 
ARSLGSINVQ LTMEALGGGG HLTNAATQIK GATIDEAIEQ LQQAITEQMS RSEDA