| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SERP2289 |
|---|
| Symbol | |
|---|
| ID | 3241776 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Staphylococcus epidermidis RP62A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002976 |
|---|
| Strand | - |
|---|
| Start bp | 2330888 |
|---|
| End bp | 2332063 |
|---|
| Gene Length | 1176 bp |
|---|
| Protein Length | 391 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 32% |
|---|
| IMG OID | 637168969 |
|---|
| Product | transporter, putative |
|---|
| Protein accession | YP_189839 |
|---|
| Protein GI | 57865725 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.00964555 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGATA ATAAAATGTT GTTCATTATT TTTATGATAG GAACATTTAC AGTAGGAATG
GCTGAATATG TAGTGACAGG ATTACTTACA CAAATCGCTG ACGATATGAA GGTTTCTATT
TCGAGTGCAG GTTTATTAAT TAGTGTTTAT GCTATTAGTG TTGCATTGAT AGGGCCTTTA
ATGCGAATCA TAACATTGAA AGTTCACGCC CACCGTCTGT TACCGATTTT AGTAGCGATT
TTTATAATAA GTAATTTAGT GGGAATGTTA GCACCGAATT TTAATGTATT GTTATTATCA
AGACTCATGT CTGCGGCAAT GCATGCGCCA TTCTTCGGTG TGTGTATGAG TGTTGCTGCG
ACAGTCGCAC CTCCTGCTAA AAAAACACAG GCCATTGCAC TTGTTCAGGC AGGTTTAACT
ATTGCTGTAA TGTTAGGTGT ACCATTCGGA TCATTTTTAG GTGGCTTTGC AAATTGGAGA
GTTGTTTTTG GATTTATGAT TGTGTTGGCA ATCATTACTA TGTTAGGAAT GATTAAATTT
GTTCCAAATG TTTCTTTAAG TGCAGAAGCA AATATTAGCA AAGAATTAAC AGTGTTTAAG
AATCCACACA TTTTAATTGT GATTGCAATT ATTGTGTTTG GTTACTCTGG TGTGTTTACT
ACTTATACAT TTATGGAGCC AATGATACGA GATTTTTCTC CATTTAAAAT TGTAGGTTTA
ACTGTTTGTT TATTTATGTT TGGTCTAGGC GGTGTGATAG GGAATTTAAT TACTGGTAAT
GTACCGGAAG ATAAATTAAC AAAAAATTTA TACCTTACAT TTCTTTTACT ATTTGTAACA
ATCATACTAT TTGTTACTGT TATTCAAAAT TCAATATTAG CATTAATCAT TTGCTTCTTA
TTCGGTTTTG GTACATTTGG TACAACCCCG TTACTTAATA GCAAAATTAT CTTAAGTGGA
AAAGAAGCAC CACTTCTTGC AAGTACGTTA GCAGCTTCTA TTTTCAATGT TGCTAATTTT
CTTGGTGCAA TAATTGGATC TATATTATTA TCAATAGGGT TACCTTACAT TCAAATTACT
TTGATATCTG GTGGAATTAT AGTGTTGGGT ATGCTTCTTA ATCTTGTTAA TCAACTTTAT
GAAAAGAAAC ATATCACATT TAATGAATAT TCATGA
|
|---|
| Protein sequence | MKDNKMLFII FMIGTFTVGM AEYVVTGLLT QIADDMKVSI SSAGLLISVY AISVALIGPL
MRIITLKVHA HRLLPILVAI FIISNLVGML APNFNVLLLS RLMSAAMHAP FFGVCMSVAA
TVAPPAKKTQ AIALVQAGLT IAVMLGVPFG SFLGGFANWR VVFGFMIVLA IITMLGMIKF
VPNVSLSAEA NISKELTVFK NPHILIVIAI IVFGYSGVFT TYTFMEPMIR DFSPFKIVGL
TVCLFMFGLG GVIGNLITGN VPEDKLTKNL YLTFLLLFVT IILFVTVIQN SILALIICFL
FGFGTFGTTP LLNSKIILSG KEAPLLASTL AASIFNVANF LGAIIGSILL SIGLPYIQIT
LISGGIIVLG MLLNLVNQLY EKKHITFNEY S
|
|---|
| |