| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SERP2156 |
|---|
| Symbol | ldh |
|---|
| ID | 3242512 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Staphylococcus epidermidis RP62A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002976 |
|---|
| Strand | - |
|---|
| Start bp | 2183384 |
|---|
| End bp | 2184334 |
|---|
| Gene Length | 951 bp |
|---|
| Protein Length | 316 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 637168842 |
|---|
| Product | L-lactate dehydrogenase |
|---|
| Protein accession | YP_189712 |
|---|
| Protein GI | 57865632 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0039] Malate/lactate dehydrogenases |
|---|
| TIGRFAM ID | [TIGR01771] L-lactate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAT TTGGGAAAAA AGTTGTTTTA GTAGGAGACG GTTCCGTAGG TTCAAGTTAT
GCATTTGCTA TGGTGACTCA AGGAATTGCA GATGAATTTG TAATTATTGA TATTGCAAAA
GATAAAGTGG AAGCAGACGT TAAAGATTTA AACCATGGTG CACTTTACAG TTCTTCACCA
GTGACTGTAA AAGCTGGAGA ATATGAAGAT TGTAAAGATG CAGATTTAGT TGTTATTACA
GCAGGTGCAC CTCAAAAACC GGGTGAAACT CGTTTACAAC TTGTTGAGAA AAATACTAAA
ATCATGAAAA GTATCGTAAC TAGTGTCATG GATAGTGGCT TTGATGGTTT CTTCCTAATT
GCTGCAAACC CAGTTGATAT CTTAACACGT TATGTTAAAG AAGTTACAGG TTTACCAGCT
GAACGTGTTA TTGGTTCTGG TACAGTGCTT GATAGTGCAA GATTCAGATA TTTAATAAGT
AAAGAATTAG GTGTTACATC AAGTAGTGTT CACGCTAGCA TTATAGGTGA ACATGGTGAC
TCTGAACTTG CAGTTTGGTC TCAAGCAAAC GTTGGAGGTA TTTCAGTGTA TGATACATTG
AAAGAAGAAA CTGGTAGCGA TGCTAAAGCG AATGAAATTT ATATTAATAC AAGAGATGCT
GCTTACGATA TCATTCAAGC TAAAGGATCT ACGTATTATG GTATAGCTCT AGCACTATTA
CGTATTTCTA AAGCTTTACT AAATAATGAA AATAGTATTT TGACAGTTTC TAGTCAACTT
AATGGTCAAT ATGGATTTAA CGATGTTTAT CTTGGCTTAC CAACACTTAT CAATCAAAAT
GGTGCAGTTA AAATTTATGA AACACCATTA AATGATAACG AACTACAATT ACTAGAAAAA
TCAGTGAAAA CTTTAGAAGA CACTTATGAT TCTATAAAAC ATTTAGTTTA A
|
|---|
| Protein sequence | MKKFGKKVVL VGDGSVGSSY AFAMVTQGIA DEFVIIDIAK DKVEADVKDL NHGALYSSSP
VTVKAGEYED CKDADLVVIT AGAPQKPGET RLQLVEKNTK IMKSIVTSVM DSGFDGFFLI
AANPVDILTR YVKEVTGLPA ERVIGSGTVL DSARFRYLIS KELGVTSSSV HASIIGEHGD
SELAVWSQAN VGGISVYDTL KEETGSDAKA NEIYINTRDA AYDIIQAKGS TYYGIALALL
RISKALLNNE NSILTVSSQL NGQYGFNDVY LGLPTLINQN GAVKIYETPL NDNELQLLEK
SVKTLEDTYD SIKHLV
|
|---|
| |