| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SERP1368 |
|---|
| Symbol | hemE |
|---|
| ID | 3242851 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Staphylococcus epidermidis RP62A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002976 |
|---|
| Strand | - |
|---|
| Start bp | 1425049 |
|---|
| End bp | 1426083 |
|---|
| Gene Length | 1035 bp |
|---|
| Protein Length | 344 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 637168022 |
|---|
| Product | uroporphyrinogen decarboxylase |
|---|
| Protein accession | YP_188937 |
|---|
| Protein GI | 57867299 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
|---|
| TIGRFAM ID | [TIGR01464] uroporphyrinogen decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.368391 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCGCAGCA AAAACGATAC AATTTTAAAA GCTATAAAAG GAGAAAGTAC GTCACATACA
CCTGTTTGGT TTATGAGACA GGCTGGACGT TCTCAACCTG AGTATCGAAA ATTAAAAGAA
AAATATTCTC TATTTGAAAT CACACATCAA CCGGAATTGT GTGCATATGT GACACATTTA
CCAGTAGATA ATTATCAAAC CGATGCGGCT GTATTGTACA AAGATATTAT GACACCACTC
AAACCAATTG GTGTAGATGT CGAAATTAAA TCAGGAATAG GACCTGTAAT TTCCAATCCT
ATTCAAACTG TTAAAGATGT AGAAAGGCTA TCCCAAATAG ATCCTAAAAG AGATGTCCCA
TATGTATTAG ATACAATTAA GTTACTCACT GAAGAAAAAC TTAATGTACC TTTAATAGGT
TTTACAGGAG CGCCATTTAC TTTAGCATCT TATATGATTG AGGGAGGGCC TTCAAAAAAT
TATAATTTTA CTAAAGCGAT GATGTATAGA GATGAGGAAA CATGGTTTGC TTTAATGAAC
CATCTCGTCG ACATTTCTAT TGATTATGTT GTAGCACAAG TGGAAGCAGG AGCGGAAATC
ATTCAGATTT TTGATTCCTG GGTTGGTGCA CTCAATGTGA AGGATTATCG CTATTATATT
AAGCCAGCCA TGAATAAATT GATTTCTGGC ATTAAAGCTT ATTATGATGT ACCTATCATT
CTTTTTGGTG TCGGTGCAAG TCATTTAATT AATGAATGGA ATGATTTACC GATAGATGTA
CTAGGCCTTG ATTGGAGAAC TACAATAAAG CAAGCTGACA AAATGGGAGT CAATAAAGCA
ATTCAAGGTA ATTTAGACCC ATCTGTACTG TTAGCGCCAT GGGATGTCAT AGAATCACGA
CTCAAAGACA TATTAAATCA AGGTTTAAAT CGTGGAAAGC ATATTTTCAA TTTAGGTCAC
GGTGTATTTC CAGAAGTTAA ACCAGAAACT TTGCGAAAAG TGACTGAATT TGTTCATAAT
TATACAGCGA AATAG
|
|---|
| Protein sequence | MRSKNDTILK AIKGESTSHT PVWFMRQAGR SQPEYRKLKE KYSLFEITHQ PELCAYVTHL
PVDNYQTDAA VLYKDIMTPL KPIGVDVEIK SGIGPVISNP IQTVKDVERL SQIDPKRDVP
YVLDTIKLLT EEKLNVPLIG FTGAPFTLAS YMIEGGPSKN YNFTKAMMYR DEETWFALMN
HLVDISIDYV VAQVEAGAEI IQIFDSWVGA LNVKDYRYYI KPAMNKLISG IKAYYDVPII
LFGVGASHLI NEWNDLPIDV LGLDWRTTIK QADKMGVNKA IQGNLDPSVL LAPWDVIESR
LKDILNQGLN RGKHIFNLGH GVFPEVKPET LRKVTEFVHN YTAK
|
|---|
| |